View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0225_low_4 (Length: 526)
Name: NF0225_low_4
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 60 - 516
Target Start/End: Original strand, 48879331 - 48879787
Alignment:
| Q |
60 |
ttgcaacacatgtttgatggttcttatttgtaatagaaatagacttaaggaagaaataagataattaccaatcggcaagttccagcttcaacatcgcaga |
159 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48879331 |
ttgcaacacatgtttgatggttcttatctgtaatagaaatagacttaaggaagaaataagataattaccaatcggcaagttccagcttcaacatcgcaga |
48879430 |
T |
|
| Q |
160 |
ccgggtagtcatgagggcaacagctggaaccgtcgtcgcagcaagttgcagactcaatagggcagcatccccaagcaaagcagaagtttccatactcaaa |
259 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48879431 |
ccgggtagtcatgagggcaacagctggaaccgtcatcgcagcaagttgcagactcaatagggcagcatccccaagcaaagcagaagtttccatactcaaa |
48879530 |
T |
|
| Q |
260 |
aaggcaacaacatgtggttccagctgagcaagagtagtattcatcacatacagttgaaggctgaacaggtgatggaggtgaaggaccaggatttggtggg |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48879531 |
aaggcaacaacatgtggttccagctgagcaagagtagtattcatcacatacagttgaaggctgaacaggtgatggaggtgaaggaccaggatttggtggg |
48879630 |
T |
|
| Q |
360 |
ttctgacccttcttgataggataggatgcctccattgcaattccacacttgccagtttcttttgttaacaaatttctctccatcttaatgtagccatttt |
459 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48879631 |
ttctgacccttcttgataggatatgatgcctccattgcaattccacacttgccagtttcttttgttaacaaatttctctccatcttaatgtagccatttt |
48879730 |
T |
|
| Q |
460 |
caccccatgatgaaccccatgagttcctcactaaccagtaatcgatcccgttctctg |
516 |
Q |
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| T |
48879731 |
caccccatgatgaaccccatgagttcctcactaaccagtaatcgatcccgttctctg |
48879787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 24743695 - 24743655
Alignment:
| Q |
360 |
ttctgacccttcttgataggataggatgcctccattgcaat |
400 |
Q |
| |
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|||||||| |||||||||||||| |||| |||||||||||| |
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| T |
24743695 |
ttctgaccattcttgataggatatgatggctccattgcaat |
24743655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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