View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0225_low_5 (Length: 488)
Name: NF0225_low_5
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 28 - 480
Target Start/End: Complemental strand, 45955685 - 45955206
Alignment:
| Q |
28 |
caaaaatcttatgaatttaaactaatggttttaaaatatgggaaccaaaattgtaagtaaaagccttaacaacgcttcctttctaaatttccgatgtata |
127 |
Q |
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| T |
45955685 |
caaaaatcttatgaatttaaactaatggttttaaaatatgggaaccaaaattgtaagtaaaagcct-aacaacgcttcctttctaaatttccgatgtata |
45955587 |
T |
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| Q |
128 |
ttgtcttagcttgtgacattatcttagccatta---------------------ttttataggtctacaatctgaagcatgaattttcctcacattagat |
206 |
Q |
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| T |
45955586 |
ttgtcttagcttgtgacattatcttagccattaatttgtgtgtgtatgtccttattttataggtctacaatctgaagcatgaattttcctcacattagat |
45955487 |
T |
|
| Q |
207 |
ggatggtgcattttgtttatcttataattaataaatgattttattattat-------attctaaaaaaggtgttaaaagatggagggaaatgaaaggctg |
299 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45955486 |
ggatggtgcattttctttatcttataattaataaatgattttattattattattattattctaaaaaaggtgttaaaagatggagggaaatgaaaggctg |
45955387 |
T |
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| Q |
300 |
tgaattgaagggaagtgaggtggaggtaagtcctagtcttatcgcaacataataagaggaaatgaaacacacttcaaacttcataattaatttcatccta |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45955386 |
tgaattgaagggaagtgaggtggaggtaagtcctagtcttatcgcaacataataagaggaaatgaaacacacttcaaacttcataattaatttcatccta |
45955287 |
T |
|
| Q |
400 |
tacacacctcacaaccaaacatggcaagattggtggcactccaacagaatcaactatctttccctcctttagcttcatctc |
480 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45955286 |
tacacacctcacaaccaaacatggcaagattggtggcactccaacagaatcaactatctttccctcctttagcttcttctc |
45955206 |
T |
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