View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0225_low_54 (Length: 223)

Name: NF0225_low_54
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0225_low_54
NF0225_low_54
[»] chr3 (1 HSPs)
chr3 (24-165)||(1182049-1182193)
[»] chr7 (5 HSPs)
chr7 (49-190)||(8035221-8035366)
chr7 (49-178)||(38111126-38111259)
chr7 (49-178)||(45034130-45034263)
chr7 (49-178)||(46045429-46045562)
chr7 (50-144)||(19303982-19304080)
[»] chr5 (2 HSPs)
chr5 (49-178)||(32386010-32386143)
chr5 (49-178)||(14024457-14024590)
[»] chr8 (3 HSPs)
chr8 (49-178)||(41999806-41999939)
chr8 (49-178)||(45092963-45093096)
chr8 (49-178)||(9215745-9215878)
[»] chr4 (3 HSPs)
chr4 (49-178)||(28945820-28945953)
chr4 (49-178)||(1368956-1369089)
chr4 (49-157)||(36859260-36859372)
[»] chr2 (3 HSPs)
chr2 (49-178)||(11996187-11996320)
chr2 (50-178)||(24126868-24127000)
chr2 (49-178)||(42865439-42865572)
[»] chr1 (1 HSPs)
chr1 (49-178)||(6293538-6293671)


Alignment Details
Target: chr3 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 1182193 - 1182049
Alignment:
Q  24 gtatatagtttccttttgatgaggacttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaataga 120  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    ||||||||||| |||||||||||||||||||||||    
T  1182193 gtatatagtttccttttgatgaggacttctatgtatctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcatatttcaaaataga 1182094  T
Q  121 tttgtttcaccaattccacaaatactagcatgttgtcatgaaagt 165  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  1182093 tttgtttcaccaattccataaatactagcatgttgtcatgaaagt 1182049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 4e-40; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 49 - 190
Target Start/End: Complemental strand, 8035366 - 8035221
Alignment:
Q  49 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 144  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||||||    
T  8035366 cttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata 8035267  T
Q  145 ctagcatgttgtcatgaaagttgtatgccaagtatcagaataatct 190  Q
    | | ||||||||||||||||| || ||||||||| |||||| ||||    
T  8035266 ccaacatgttgtcatgaaagtagtctgccaagtagcagaattatct 8035221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 49 - 178
Target Start/End: Original strand, 38111126 - 38111259
Alignment:
Q  49 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 144  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |||||    
T  38111126 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata 38111225  T
Q  145 ctagcatgttgtcatgaaagttgtatgccaagta 178  Q
    | | ||||||||||||||||| || |||||||||    
T  38111226 ccaacatgttgtcatgaaagtagtctgccaagta 38111259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 49 - 178
Target Start/End: Original strand, 45034130 - 45034263
Alignment:
Q  49 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 144  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||| |||||||| |||||||||| |||| ||||||| |||||||||||||||    
T  45034130 cttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagaattgtttcgccaattccacaaata 45034229  T
Q  145 ctagcatgttgtcatgaaagttgtatgccaagta 178  Q
    | | |||||| |||||||||| || |||||||||    
T  45034230 ccaacatgttatcatgaaagtagtctgccaagta 45034263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 46045562 - 46045429
Alignment:
Q  49 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 144  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |||||    
T  46045562 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata 46045463  T
Q  145 ctagcatgttgtcatgaaagttgtatgccaagta 178  Q
    | | ||||||||||||||||| || |||||||||    
T  46045462 ccaacatgttgtcatgaaagtagtctgccaagta 46045429  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 19303982 - 19304080
Alignment:
Q  50 ttctatctctctagtaaacttttgaattaccag---tgaattgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 144  Q
    |||||| ||||  ||||||||||||||||| ||   || |||| | |||| |||||||| |||||||||| |||||||||| | |||||||||||||||    
T  19303982 ttctatgtctcaggtaaacttttgaattactagcgttggattgttcggtctttgaaatcctatttcaaaaatagatttgttccgccaattccacaaata 19304080  T

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Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 32386143 - 32386010
Alignment:
Q  49 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 144  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||||||    
T  32386143 cttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata 32386044  T
Q  145 ctagcatgttgtcatgaaagttgtatgccaagta 178  Q
    | | ||||||||||||||||| || |||||||||    
T  32386043 ccaacatgttgtcatgaaagtagtctgccaagta 32386010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 14024590 - 14024457
Alignment:
Q  49 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 144  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |||||    
T  14024590 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata 14024491  T
Q  145 ctagcatgttgtcatgaaagttgtatgccaagta 178  Q
    | | ||||||||||||||||| || |||||||||    
T  14024490 ccaacatgttgtcatgaaagtagtctgccaagta 14024457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 41999939 - 41999806
Alignment:
Q  49 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 144  Q
    |||||||||||||||||||||||||||||| |||||    ||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||||||    
T  41999939 cttctatctctctagtaaacttttgaattaacagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata 41999840  T
Q  145 ctagcatgttgtcatgaaagttgtatgccaagta 178  Q
    | | ||||||||||||||||| || |||||||||    
T  41999839 ccaacatgttgtcatgaaagtagtctgccaagta 41999806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 45093096 - 45092963
Alignment:
Q  49 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 144  Q
    ||||||||||||||||||||||||||||||| ||||    ||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||||||    
T  45093096 cttctatctctctagtaaacttttgaattacgagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata 45092997  T
Q  145 ctagcatgttgtcatgaaagttgtatgccaagta 178  Q
    | | ||||||||| ||||| | || |||||||||    
T  45092996 ccaacatgttgtcgtgaaattagtctgccaagta 45092963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 9215878 - 9215745
Alignment:
Q  49 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 144  Q
    |||||||||||||||| ||||||||||| |||||||    ||||||| ||| |||||||| |||||||||| || ||||||||| |||||||||||||||    
T  9215878 cttctatctctctagtcaacttttgaataaccagtgttggattgcttagtctttgaaatcctatttcaaaaatatatttgtttcgccaattccacaaata 9215779  T
Q  145 ctagcatgttgtcatgaaagttgtatgccaagta 178  Q
    | |||||| |||||||||||| || | |||||||    
T  9215778 ccagcatgatgtcatgaaagtagtctcccaagta 9215745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 49 - 178
Target Start/End: Original strand, 28945820 - 28945953
Alignment:
Q  49 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 144  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| |||||||||||||||    
T  28945820 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccacaaata 28945919  T
Q  145 ctagcatgttgtcatgaaagttgtatgccaagta 178  Q
    | | ||||||||||||||||| || |||||||||    
T  28945920 ccaacatgttgtcatgaaagtagtctgccaagta 28945953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 1369089 - 1368956
Alignment:
Q  49 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 144  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |||||    
T  1369089 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata 1368990  T
Q  145 ctagcatgttgtcatgaaagttgtatgccaagta 178  Q
    | | ||||||||||||||||| || |||||||||    
T  1368989 ccaacatgttgtcatgaaagtagtctgccaagta 1368956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 157
Target Start/End: Original strand, 36859260 - 36859372
Alignment:
Q  49 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttc-aaaatagatttgtttcaccaattccacaaata 144  Q
    ||||||| ||||||||||||||||||||||| |||||   |||||| |||| |||||||| |||||| |||||||||||||||  |||||||||||||||    
T  36859260 cttctatttctctagtaaacttttgaattactagtgatggattgctcggtctttgaaatcctatttcaaaaatagatttgtttagccaattccacaaata 36859359  T
Q  145 ctagcatgttgtc 157  Q
      | |||||||||    
T  36859360 tcaacatgttgtc 36859372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 49 - 178
Target Start/End: Original strand, 11996187 - 11996320
Alignment:
Q  49 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 144  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||| ||| |||| |||||||||| |||||||||||| |||||||||||||||    
T  11996187 cttctatctctctagtaaacttttgaattaccagtgttggattgcttggtctttggaatcctatttcaaaaatagatttgtttcgccaattccacaaata 11996286  T
Q  145 ctagcatgttgtcatgaaagttgtatgccaagta 178  Q
    | | ||||||||||||||||| || |||||||||    
T  11996287 ccaacatgttgtcatgaaagtagtctgccaagta 11996320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 178
Target Start/End: Original strand, 24126868 - 24127000
Alignment:
Q  50 ttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaatac 145  Q
    |||||||||||||||||||||||||||||||||||    ||||| ||||| ||||||||||||||||||| |||||||||||| ||||||||| ||||||    
T  24126868 ttctatctctctagtaaacttttgaattaccagtgttggattgcctggtctttgaaatcatatttcaaaaatagatttgtttcgccaattccataaatac 24126967  T
Q  146 tagcatgttgtcatgaaagttgtatgccaagta 178  Q
     | ||||||||||||||||| || |||||||||    
T  24126968 caacatgttgtcatgaaagtagtctgccaagta 24127000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 42865572 - 42865439
Alignment:
Q  49 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 144  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |||||    
T  42865572 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattccataaata 42865473  T
Q  145 ctagcatgttgtcatgaaagttgtatgccaagta 178  Q
    | | ||||||||||||||||| || |||||||||    
T  42865472 ccaacatgttgtcatgaaagtagtctgccaagta 42865439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 6293671 - 6293538
Alignment:
Q  49 cttctatctctctagtaaacttttgaattaccagtga---attgcttggtcattgaaatcatatttcaaaa-tagatttgtttcaccaattccacaaata 144  Q
    |||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||| |||||||||| |||||||||||| |||||| || |||||    
T  6293671 cttctatctctctagtaaacttttgaatcaccagtgttggattgcttggtctttgaaatcctatttcaaaaatagatttgtttcgccaattacataaata 6293572  T
Q  145 ctagcatgttgtcatgaaagttgtatgccaagta 178  Q
    | | ||||||||||||||||| || |||||||||    
T  6293571 ccaacatgttgtcatgaaagtagtctgccaagta 6293538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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