View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0225_low_64 (Length: 207)
Name: NF0225_low_64
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0225_low_64
Alignment Details
Target: chr5 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 3004272 - 3004464
Alignment:
Q
19
agtttatttgctaattatgtttgtttccaatcccattttgattaagtatgtgtcgtggtgactgcatttgtgtttttcagttggcgttcttt--------
110
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
3004272
agtttatttgctaattatgtttgtttccaatcccattttgattaagtatgtgtcgtggtgactgcatttgtgtttttcagttggcgttctttgtgtttag
3004371
T
Q
111
-------gtgtttagtggtgatatagagcacaaacaagatgggattgaattcaaccagga--ggacagatgccgatcaagtaaatgatgatgt
194
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
T
3004372
tggtcaagtgtttagtggtgatatagagcacaaacaagatgggattgaattcaaccaggacgggacagatgctgatcaagtaaatgatgatgt
3004464
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 54654319 - 54654511
Alignment:
Q
19
agtttatttgctaattatgtttgtttccaatcccattttgattaagtatgtgtcgtggtgactgcatttgtgtttttcagttggcgttcttt--------
110
Q
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
T
54654319
agtttatttgctaattatatttgtttcaaatcccattttgattaagtatgtgtcgcggtgactgcatttgtgtttttcagttggcgttctttgtgtttag
54654418
T
Q
111
-------gtgtttagtggtgatatagagcacaaacaagatgggattgaattcaaccagga--ggacagatgccgatcaagtaaatgatgatgt
194
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||
T
54654419
tggtcaagtgtttagtggtgatatagagcacaaacaagatgggattgaattcaaccaggaggggacagatgctgatcaagacaatgatgatgt
54654511
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 6781336 - 6781266
Alignment:
Q
122
tgatatagagcacaaacaagatgggattgaattcaaccagga--ggacagatgccgatcaagtaaatgatg
190
Q
|||||| ||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||
T
6781336
tgatatcgagcacaaacaagatggaattgaattcaaccaggaggggacagatgctgatcaagtaaatgatg
6781266
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 6666936 - 6666985
Alignment:
Q
147
attgaattcaaccaggagg--acagatgccgatcaagtaaatgatgatgt
194
Q
|||| |||||||||||||| ||||||||||||||||| |||||||||||
T
6666936
attggattcaaccaggaggggacagatgccgatcaagttaatgatgatgt
6666985
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 24761546 - 24761583
Alignment:
Q
19
agtttatttgctaattatgtttgtttccaatcccattt
56
Q
||||||||||||||||||||||||||||||||||||||
T
24761546
agtttatttgctaattatgtttgtttccaatcccattt
24761583
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 24761177 - 24761214
Alignment:
Q
19
agtttatttgctaattatgtttgtttccaatcccattt
56
Q
|||||||||||||||||||||||||||| |||||||||
T
24761177
agtttatttgctaattatgtttgtttccgatcccattt
24761214
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 24761210 - 24761249
Alignment:
Q
83
catttgtgtttttcagttggcgttctttgtgtttagtggt
122
Q
||||||||||| |||||||| |||||||||||||||||||
T
24761210
catttgtgtttctcagttggtgttctttgtgtttagtggt
24761249
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 24761579 - 24761618
Alignment:
Q
83
catttgtgtttttcagttggcgttctttgtgtttagtggt
122
Q
||||||||||| |||||||| |||||||||||||||||||
T
24761579
catttgtgtttctcagttggtgttctttgtgtttagtggt
24761618
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 52128981 - 52129018
Alignment:
Q
19
agtttatttgctaattatgtttgtttccaatcccattt
56
Q
||||||||||||||||||||||||||||||||||||||
T
52128981
agtttatttgctaattatgtttgtttccaatcccattt
52129018
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 52128612 - 52128649
Alignment:
Q
19
agtttatttgctaattatgtttgtttccaatcccattt
56
Q
|||||||||||||||||||||||||||| |||||||||
T
52128612
agtttatttgctaattatgtttgtttccgatcccattt
52128649
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 52128645 - 52128684
Alignment:
Q
83
catttgtgtttttcagttggcgttctttgtgtttagtggt
122
Q
||||||||||| |||||||| |||||||||||||||||||
T
52128645
catttgtgtttctcagttggtgttctttgtgtttagtggt
52128684
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 52129014 - 52129053
Alignment:
Q
83
catttgtgtttttcagttggcgttctttgtgtttagtggt
122
Q
||||||||||| |||||||| |||||||||||||||||||
T
52129014
catttgtgtttctcagttggtgttctttgtgtttagtggt
52129053
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
© Oklahoma State University
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