View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0225_low_65 (Length: 204)
Name: NF0225_low_65
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_low_65 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 4e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 2 - 197
Target Start/End: Complemental strand, 39184931 - 39184736
Alignment:
| Q |
2 |
gtttgctccatgtcaccggcagcatcatttctctgatttaggttgtgattccgcttcaaactggcgtcgttgcccaagttttgtagttgtgtttcggctt |
101 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||| ||| |
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| T |
39184931 |
gttttctccatgtcaccggcagctgcatttctctgatttaggttgtgattctgcttcaaactggcgtcgttgcctatgttttgtagttgtgtttcgtctt |
39184832 |
T |
|
| Q |
102 |
cctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcgttggcttgtgggtattttcttcg |
197 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39184831 |
cctatatatatgttttgtgttgctgtctgttttcttggtgaggcggtttggcggcgtagttttggctctatcgttggcttgtgggtatattcttcg |
39184736 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 189
Target Start/End: Original strand, 8730292 - 8730424
Alignment:
| Q |
55 |
cttcaaactggcgtcgttgcccaagttttgtagttgtgtttcggcttcctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtttggca |
154 |
Q |
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||||| |||||||||| ||||| ||||||| ||| | |||| |||||| | ||| | |||| |||||||| |||||||| || |||| | |||||||| |
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| T |
8730292 |
cttcagactggcgtcgctgcccgtgttttgttgtttggcttcgtcttcctctggatctatttt-tgttgctgcctgttttcatg-tgagacagtttggca |
8730389 |
T |
|
| Q |
155 |
gcgtagttttggctctatcgttggcttgtgggtat |
189 |
Q |
| |
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| |||||| || |||||||||||| | |||||||| |
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| T |
8730390 |
gtgtagttctgtctctatcgttggttggtgggtat |
8730424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 9e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 42373538 - 42373682
Alignment:
| Q |
44 |
ttgtgattccgcttcaaactggcgtcgttgcccaagttttgtagttgtgtttcggcttcctatagatatgttttgtgttgctgtctgttttcttggtgag |
143 |
Q |
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||||||||||||||||||| || |||||||||| |||||| |||||||||||| |||||||| ||| |||| | |||| ||| |||||||||||||||| |
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| T |
42373538 |
ttgtgattccgcttcaaaccggtgtcgttgcccgtgttttgaagttgtgtttcgtcttcctatcgatctgttctatgttactgcctgttttcttggtgag |
42373637 |
T |
|
| Q |
144 |
gcggtttggcagcgtagttttggctctatcgttggcttgtgggtat |
189 |
Q |
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| |||||| | ||||||||||| ||||||| |||| |||||||||| |
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| T |
42373638 |
gtggtttgacggcgtagttttgtctctatctttgg-ttgtgggtat |
42373682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 17032951 - 17032996
Alignment:
| Q |
119 |
tgttgctgtctgttttcttggtgaggcggtttggcagcgtagtttt |
164 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||| |||||||| |
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|
| T |
17032951 |
tgttgctgcttgttttcttggtgagacggtttggcagtgtagtttt |
17032996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 36 - 153
Target Start/End: Original strand, 16501182 - 16501300
Alignment:
| Q |
36 |
gatttaggttgtgattccgcttcaaactggcgtcgttgcccaagttttgtagttgtgtttcggcttcctatagatatgt-tttgtgttgctgtctgtttt |
134 |
Q |
| |
|
||||| |||||||||||| |||||||| ||||||| |||||| ||| ||| |||| ||| | |||||| || || ||| ||||||| || ||||||||| |
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|
| T |
16501182 |
gatttgggttgtgattccacttcaaaccggcgtcgctgcccatgttgtgttgttggttttagtcttcctctaaatttgtgtttgtgtggccgtctgtttt |
16501281 |
T |
|
| Q |
135 |
cttggtgaggcggtttggc |
153 |
Q |
| |
|
||||||||||||||||||| |
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| T |
16501282 |
cttggtgaggcggtttggc |
16501300 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 35 - 161
Target Start/End: Complemental strand, 31903036 - 31902910
Alignment:
| Q |
35 |
tgatttaggttgtgattccgcttcaaactggcgtcgttgcccaagttttgtagttgtgtttcggcttcctatagatatgt-tttgtgttgctgtctgttt |
133 |
Q |
| |
|
|||| ||||||||| ||||||||||||| ||||||| ||||| ||||||| |||| |||||| |||||| ||||| | | || |||||||||| || || |
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| T |
31903036 |
tgatctaggttgtgtttccgcttcaaaccggcgtcgctgcccgtgttttgttgttgggtttcgtcttcctctagatctatgttagtgttgctgtttg-tt |
31902938 |
T |
|
| Q |
134 |
tcttggtgaggcggtttggcagcgtagt |
161 |
Q |
| |
|
||||| |||||| |||||| ||||||| |
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|
| T |
31902937 |
tcttgctgaggctatttggcggcgtagt |
31902910 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 161
Target Start/End: Complemental strand, 39339511 - 39339357
Alignment:
| Q |
7 |
ctccatgtcaccggcagcatcatttctctgatttaggttgtgattccgcttcaaactggcgtcgttgcccaagttttgtagttgtgtttcggcttcctat |
106 |
Q |
| |
|
|||| |||||||||| || | ||||| |||||| ||||||| || | |||||||| | ||||| ||| | ||||||| |||| |||| |||||| | |
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| T |
39339511 |
ctccttgtcaccggcggccgcctttctatgattttggttgtgttttcacttcaaaccgacgtcgctgctcgtgttttgttgttggatttcctcttcctct |
39339412 |
T |
|
| Q |
107 |
agatatgt-tttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagt |
161 |
Q |
| |
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|||| | | |||||||||||||||| ||||||||||||| ||||||| ||||||| |
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|
| T |
39339411 |
agatctatatttgtgttgctgtctg-tttcttggtgaggatgtttggcggcgtagt |
39339357 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 189
Target Start/End: Complemental strand, 25505615 - 25505483
Alignment:
| Q |
55 |
cttcaaactggcgtcgttgcccaagttttgtagttgtgtttcggcttcctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtttggca |
154 |
Q |
| |
|
||||| |||||||||| ||||| ||||||| ||| | |||| |||||| | ||| | |||| |||||||| |||||||| || |||| | |||||||| |
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|
| T |
25505615 |
cttcagactggcgtcgctgcccgtgttttgttgtttggcttcgtcttcctctggatctatttt-tgttgctgcctgttttcatg-tgagacagtttggca |
25505518 |
T |
|
| Q |
155 |
gcgtagttttggctctatcgttggcttgtgggtat |
189 |
Q |
| |
|
| |||||| || |||||||||||| | |||||||| |
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|
| T |
25505517 |
gtgtagttctgtctctatcgttggttggtgggtat |
25505483 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 192
Target Start/End: Complemental strand, 25595216 - 25595103
Alignment:
| Q |
79 |
gttttgtagttgtgtttcggcttcctatagatatgtttt-gtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcgttg |
177 |
Q |
| |
|
||||||| ||| ||||||| | |||| ||||| |||||| ||||||||| ||||| |||||||||||||||||||| |||||||| | |||||||| | |
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|
| T |
25595216 |
gttttgttgttatgtttcgtcatcctctagatttgtttttgtgttgctgcttgttt-cttggtgaggcggtttggcaacgtagtttcgtctctatcgctc |
25595118 |
T |
|
| Q |
178 |
gcttgtgggtatttt |
192 |
Q |
| |
|
| || |||||||||| |
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|
| T |
25595117 |
gtttatgggtatttt |
25595103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 161
Target Start/End: Complemental strand, 17501880 - 17501759
Alignment:
| Q |
40 |
taggttgtgattccgcttcaaactggcgtcgttgcccaagttttgtagttgtgtttcggcttcctatagatatgt-tttgtgttgctgtctgttttcttg |
138 |
Q |
| |
|
||||||||| ||||||||||||||| |||| ||| || ||||||| ||| ||||| |||||| ||||| | | ||||||||||| || |||| ||| |
|
|
| T |
17501880 |
taggttgtgtttccgcttcaaactgacgtcattgtccgtgttttgttgttagatttcgtcttcctctagatctatatttgtgttgcttcctatttt-ttg |
17501782 |
T |
|
| Q |
139 |
gtgaggcggtttggcagcgtagt |
161 |
Q |
| |
|
|||||| ||||||||||||||| |
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|
| T |
17501781 |
gtgaggatgtttggcagcgtagt |
17501759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 189
Target Start/End: Original strand, 5556047 - 5556132
Alignment:
| Q |
105 |
atagatatgt-tttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcgttggcttgtgggtat |
189 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| ||||| ||||||| ||| || | |||||| |||| ||| ||| |||||||||| |
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|
| T |
5556047 |
atagatatgtgtttgtgttgctgcttgttttcatggtgtggcggttaggctgcattgttttgtctctgtcgctggtttgtgggtat |
5556132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 37 - 189
Target Start/End: Original strand, 9519052 - 9519205
Alignment:
| Q |
37 |
atttaggttgtgattccgcttcaaactggcgtcgttgcccaagttttgtagttgtgtttcggcttcctatagatatgt-tttgtgttgctgtctgttttc |
135 |
Q |
| |
|
|||| ||||||| | ||||||||||| |||||| ||||| ||||||| |||| |||||| ||| || ||||| ||| ||||| ||||||| ||||||| |
|
|
| T |
9519052 |
atttgggttgtgttcccgcttcaaaccagcgtcgctgcccgtgttttgttgttgggtttcgtctttctctagatttgtgtttgtattgctgt-tgttttc |
9519150 |
T |
|
| Q |
136 |
ttggtgaggcggtttggcagcgtag-ttttggctctatcgttggcttgtgggtat |
189 |
Q |
| |
|
|||||||| || ||||| | |||| ||||| | |||||| ||| |||||||||| |
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|
| T |
9519151 |
atggtgaggtgggttggcggtgtagtttttgtccctatcgctggtttgtgggtat |
9519205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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