View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0225_low_9 (Length: 439)

Name: NF0225_low_9
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0225_low_9
NF0225_low_9
[»] chr4 (3 HSPs)
chr4 (127-264)||(2464463-2464601)
chr4 (121-248)||(6736510-6736629)
chr4 (62-105)||(2464618-2464660)
[»] chr2 (3 HSPs)
chr2 (39-229)||(28173413-28173596)
chr2 (121-263)||(11951637-11951782)
chr2 (121-264)||(2743968-2744109)
[»] scaffold0312 (1 HSPs)
scaffold0312 (121-263)||(18990-19133)
[»] chr1 (1 HSPs)
chr1 (121-263)||(411437-411580)
[»] chr3 (2 HSPs)
chr3 (127-260)||(45227735-45227870)
chr3 (123-264)||(29896665-29896808)
[»] chr7 (1 HSPs)
chr7 (179-264)||(26300141-26300227)
[»] chr6 (1 HSPs)
chr6 (121-264)||(29935083-29935224)


Alignment Details
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 127 - 264
Target Start/End: Complemental strand, 2464601 - 2464463
Alignment:
Q  127 caaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtcttta-ccaaacaatttt 225  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||    
T  2464601 caaagaaatggtgagtcacaagaattcaatgggagcatgacaaacaaagtggacataatggatgagtgaagttttcaccggtctttatccaaaccatttt 2464502  T
Q  226 taaactaaaaatttcatcctttgtaaactcattcatgct 264  Q
    | ||||||||||||||||||||| |||||||||||||||    
T  2464501 ttaactaaaaatttcatcctttgaaaactcattcatgct 2464463  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 121 - 248
Target Start/End: Original strand, 6736510 - 6736629
Alignment:
Q  121 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtcttta-ccaaac 219  Q
    ||||| ||||||||||||||||||||||||||||| |||| ||| ||||||||||| || |||||||   |||||         ||||||||| ||||||    
T  6736510 tgaaaccaaagaaatggtgagtcacaagaattcaacgggagcatgacaaacaaagtagaaataatgggtaagtga---------cggtctttacccaaac 6736600  T
Q  220 aatttttaaactaaaaatttcatcctttg 248  Q
    |||||||||||||||| ||||||||||||    
T  6736601 aatttttaaactaaaagtttcatcctttg 6736629  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 2464660 - 2464618
Alignment:
Q  62 aagaagaaaactccaagagatttaatcctttgcaaactgtgaat 105  Q
    |||| ||||||||||||||||| |||||||||||||||||||||    
T  2464660 aagatgaaaactccaagagatt-aatcctttgcaaactgtgaat 2464618  T

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Target: chr2 (Bit Score: 106; Significance: 7e-53; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 39 - 229
Target Start/End: Complemental strand, 28173596 - 28173413
Alignment:
Q  39 tagcataggtgtttttcgtagacaagaagaaaactccaagagatttaatcctttgcaaactgtgaatctnnnnnnnnnnnnntgaaatcaaagaaatggt 138  Q
    ||||||||||||||||| ||||||||||   |||||||||||||||||||||||||||||| ||| |||             ||||||||||||||||||    
T  28173596 tagcataggtgtttttcctagacaagaa---aactccaagagatttaatcctttgcaaactctgactctaaaaaaaa-----tgaaatcaaagaaatggt 28173505  T
Q  139 gagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtcttta-ccaaacaatttttaaa 229  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  28173504 gagtcacaagaattcaatggggtcataacaaacaaagtggacataatggacaagtgaagttttcaccggtctttatccaaacaatttttaaa 28173413  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 121 - 263
Target Start/End: Complemental strand, 11951782 - 11951637
Alignment:
Q  121 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacat--aatggacgagtgaagttttcaccggtcttta-ccaa 217  Q
    ||||| ||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||  ||| ||  | ||||  ||||||||||||||| ||||    
T  11951782 tgaaaccaaagaaatggtgagtcacaataattcaatgggagcatgacaaacaaagtggacatttaatagataaatgaaaatttcaccggtctttatccaa 11951683  T
Q  218 acaatttttaaactaaaaatttcatcctttgtaaactcattcatgc 263  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  11951682 acaatttttaaactaaaaatttcatcctttggaaactcattcatgc 11951637  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 121 - 264
Target Start/End: Complemental strand, 2744109 - 2743968
Alignment:
Q  121 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatgg--acgagtgaagttttcaccggtcttta-ccaa 217  Q
    ||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||  | |||||||  | | || ||||      ||||||||| ||||    
T  2744109 tgaaaccaaagaaatggtgagtcacaagaattcaatgggagcatgacaaacaaagtaaaaataatgggtatgggt-aagt----gacggtctttacccaa 2744015  T
Q  218 acaatttttaaactaaaaatttcatcctttgtaaactcattcatgct 264  Q
    |||||||||||||||||| ||||||| |||| |||||||||||||||    
T  2744014 acaatttttaaactaaaagtttcatcatttgaaaactcattcatgct 2743968  T

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Target: scaffold0312 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 121 - 263
Target Start/End: Complemental strand, 19133 - 18990
Alignment:
Q  121 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtcttta-ccaaac 219  Q
    ||||| ||||||||||||||||||||| ||||||||| || ||| |||||||||||||||||||||||   |||||  ||||||||||||||| ||||||    
T  19133 tgaaaccaaagaaatggtgagtcacaataattcaatgagagcatgacaaacaaagtggacataatggataggtgaaaatttcaccggtctttacccaaac 19034  T
Q  220 aatttttaaactaaaaatttcatcctttgtaaactcattcatgc 263  Q
    |||||||||||||||||||||||| |||| ||||||||||||||    
T  19033 aatttttaaactaaaaatttcatcatttggaaactcattcatgc 18990  T

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Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 121 - 263
Target Start/End: Original strand, 411437 - 411580
Alignment:
Q  121 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtcttta-ccaaac 219  Q
    ||||| ||||||||||||||||||||| ||||||||| || ||| |||||||||||||||||||||||   |||||  ||||||||||||||| ||||||    
T  411437 tgaaaccaaagaaatggtgagtcacaataattcaatgagagcatgacaaacaaagtggacataatggataggtgaaaatttcaccggtctttacccaaac 411536  T
Q  220 aatttttaaactaaaaatttcatcctttgtaaactcattcatgc 263  Q
    |||||||||||||||||||||||| |||| ||||||||||||||    
T  411537 aatttttaaactaaaaatttcatcatttggaaactcattcatgc 411580  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 127 - 260
Target Start/End: Complemental strand, 45227870 - 45227735
Alignment:
Q  127 caaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtgg-acataatggacgagtgaagttttcaccggtcttta-ccaaacaattt 224  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||| | |||||||   ||||||  ||||||||||||||| |||||||||||    
T  45227870 caaagaaatggtgagtcacaagaattcaatgggagcatgacaaacaaagtggaaaataatgggtaagtgaaaatttcaccggtctttacccaaacaattt 45227771  T
Q  225 ttaaactaaaaatttcatcctttgtaaactcattca 260  Q
    ||||||||| |||||||||||| | || ||||||||    
T  45227770 ttaaactaacaatttcatccttcgaaagctcattca 45227735  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 123 - 264
Target Start/End: Original strand, 29896665 - 29896808
Alignment:
Q  123 aaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtctttaccaaacaa- 221  Q
    |||||||||||||| ||| ||||||||||||||||||| ||| |||||| |||||||||||||||| |||||| ||||||||||||||||| | ||| |     
T  29896665 aaatcaaagaaatgatgaatcacaagaattcaatgggagcatgacaaaccaagtggacataatggatgagtgatgttttcaccggtctttatccaaccat 29896764  T
Q  222 --tttttaaactaaaaatttcatcctttgtaaactcattcatgct 264  Q
      ||||||||||||||| ||||||||||  || ||||||||||||    
T  29896765 tttttttaaactaaaaa-ttcatccttttaaagctcattcatgct 29896808  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 26300141 - 26300227
Alignment:
Q  179 acataatggacgagtgaagttttcaccggtcttta-ccaaacaatttttaaactaaaaatttcatcctttgtaaactcattcatgct 264  Q
    |||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26300141 acataatggatgagtgaagttttcatcggtcattatccaaacaatttttaaactaaaaatttcatcctttgaaaactcattcatgct 26300227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 121 - 264
Target Start/End: Complemental strand, 29935224 - 29935083
Alignment:
Q  121 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatgg--acgagtgaagttttcaccggtcttta-ccaa 217  Q
    ||||| |||||||||||| ||||||||||||||||||||| ||| |||||||||||  | |||||||  | | || ||||      ||||||||| ||||    
T  29935224 tgaaaccaaagaaatggtaagtcacaagaattcaatgggagcatgacaaacaaagtaaaaataatgggtatgggt-aagt----gacggtctttacccaa 29935130  T
Q  218 acaatttttaaactaaaaatttcatcctttgtaaactcattcatgct 264  Q
    |||||||||||||||||| ||||||| |||| || ||||||||||||    
T  29935129 acaatttttaaactaaaagtttcatcatttgaaagctcattcatgct 29935083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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