View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226-INSERTION-1 (Length: 102)
Name: NF0226-INSERTION-1
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226-INSERTION-1
Alignment Details
Target: chr2 (Bit Score: 93; Significance: 8e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 8e-46
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 40457315 - 40457215
Alignment:
Q
1
aattgtttgtgctgaggcaaatcgccaagaaggtatgcttggtagtgagtctttcgaggggtctgcccttgctgtcaagaagtatcctaaggaaggaatt
100
Q
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
T
40457315
aattgtttgtgctgaggcaaatcgccaagaagctatgcttggtagtgagtctttcgaggggtctgcccttgctgtcaagaagtatcctaagaaaggaatt
40457216
T
Q
101
c
101
Q
|
T
40457215
c
40457215
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 56393357 - 56393312
Alignment:
Q
4
tgtttgtgctgaggcaaatcgccaagaaggtatgcttggtagtgag
49
Q
|||||||||||| |||||||||||||||| ||||||||||||||||
T
56393357
tgtttgtgctgaagcaaatcgccaagaagctatgcttggtagtgag
56393312
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 27517595 - 27517550
Alignment:
Q
4
tgtttgtgctgaggcaaatcgccaagaaggtatgcttggtagtgag
49
Q
|||||||||||| |||||||||||||||| ||||||||||||||||
T
27517595
tgtttgtgctgaagcaaatcgccaagaagctatgcttggtagtgag
27517550
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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