View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0226-INSERTION-11 (Length: 467)

Name: NF0226-INSERTION-11
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0226-INSERTION-11
NF0226-INSERTION-11
[»] chr2 (6 HSPs)
chr2 (1-416)||(41244431-41244846)
chr2 (153-416)||(41257462-41257722)
chr2 (413-467)||(41244381-41244435)
chr2 (161-237)||(34622430-34622506)
chr2 (161-237)||(34614943-34615019)
chr2 (1-77)||(41257787-41257863)
[»] chr4 (12 HSPs)
chr4 (164-375)||(24297931-24298145)
chr4 (161-375)||(23423596-23423813)
chr4 (161-375)||(23875140-23875357)
chr4 (161-351)||(23448096-23448286)
chr4 (161-374)||(26827693-26827909)
chr4 (1-75)||(23423525-23423599)
chr4 (1-75)||(23448025-23448099)
chr4 (1-75)||(23875354-23875428)
chr4 (1-73)||(24298147-24298219)
chr4 (3-73)||(23446673-23446743)
chr4 (1-75)||(26827906-26827980)
chr4 (164-228)||(23446745-23446809)
[»] chr8 (2 HSPs)
chr8 (164-374)||(35961475-35961688)
chr8 (1-73)||(35961690-35961762)
[»] chr1 (1 HSPs)
chr1 (1-75)||(12165104-12165178)
[»] chr7 (1 HSPs)
chr7 (30-75)||(46584524-46584569)


Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 41244431 - 41244846
Alignment:
Q  1 ccaacaacacgtgccttggaattatcctattcttcttgttatcacgtgccgcatttccagccaattcaagaacctgatcataaaattagggttacaaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41244431 ccaacaacacgtgccttggaattatcctattcttcttgttatcacgtgccgcatttccagccaattcaagaacctgatcataaaattagggttacaaaat 41244530  T
Q  101 caaaattagggttccagaaaattgaaaatcaaagattataagaaagaggatatgaaattcacctcagcagcaagatattcaagaacagcggcgaggtaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41244531 caaaattagggttccagaaaattgaaaatcaaagattataagaatgaggatatgaaattcacctcagcagcaagatattcaagaacagcggcgaggtaaa 41244630  T
Q  201 caggagcaccagtaccaacacgctgagcgtatcttcctttcttcaagtaccgaccgattcttccaactggaaattgaagaccagctctgatggatctggt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41244631 caggagcaccagtaccaacacgctgagcgtatcttcctttcttcaagtaccgaccgattcttccaactggaaattgaagaccagctctgatggatctggt 41244730  T
Q  301 cacagacttcttccttggtcctccacctttccttccaccagctcctttcttcgtcttggtgcttgcgtccatttctgagattggaatttggaaccctaac 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41244731 cacagacttcttccttggtcctccacctttccttccaccagctcctttcttcgtcttggtgcttgcgtccatttctgagattggaatttggaaccctaac 41244830  T
Q  401 ttttttgctacgaatt 416  Q
    ||||||||||||||||    
T  41244831 ttttttgctacgaatt 41244846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 153 - 416
Target Start/End: Complemental strand, 41257722 - 41257462
Alignment:
Q  153 tgaaattcacctcagcagcaagatattcaagaacagcggcgaggtaaacaggagcaccagtaccaacacgctgagcgtatcttcctttcttcaagtaccg 252  Q
    ||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41257722 tgaaattcacctcagcagcaagatattcaagaacagcagctaagtaaacaggagcaccagtaccaacacgctgagcgtatcttcctttcttcaagtaacg 41257623  T
Q  253 accgattcttccaactggaaattgaagaccagctctgatggatctggtcacagacttcttccttggtcctccacctttccttccaccagctcctttcttc 352  Q
    |||||||||||| |||||||||||||||||||||||| ||||||| ||||| ||||||||||||||    ||||||||||||||||||||||| ||||||    
T  41257622 accgattcttccgactggaaattgaagaccagctctggtggatcttgtcactgacttcttccttgg---accacctttccttccaccagctcccttcttc 41257526  T
Q  353 gtcttggtgcttgcgtccatttctgagattggaatttggaaccctaacttttttgctacgaatt 416  Q
    |||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  41257525 gtcttggtgcttgcgtccatttctgagattggaatttggaactctagattttttgctacgaatt 41257462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 413 - 467
Target Start/End: Original strand, 41244381 - 41244435
Alignment:
Q  413 aattgtaactccagctaataattttcctagctcttcatcattcctcactgccaac 467  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41244381 aattgtaactccagctaataattttcctagctcttcatcattcctcactgccaac 41244435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 34622506 - 34622430
Alignment:
Q  161 acctcagcagcaagatattcaagaacagcggcgaggtaaacaggagcaccagtaccaacacgctgagcgtatcttcc 237  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||    
T  34622506 acctcagcggcgagatattcaagaacagcggcgaggtaaacaggagcaccagcaccaacacgttcagcgtattttcc 34622430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 34615019 - 34614943
Alignment:
Q  161 acctcagcagcaagatattcaagaacagcggcgaggtaaacaggagcaccagtaccaacacgctgagcgtatcttcc 237  Q
    ||||||||||| ||||||||||||||||| || ||||||||||||||||||| ||||||||| | ||||||| ||||    
T  34615019 acctcagcagcgagatattcaagaacagcagctaggtaaacaggagcaccagcaccaacacgttcagcgtattttcc 34614943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 41257863 - 41257787
Alignment:
Q  1 ccaacaacacgtgccttggaattatcctattcttcttgttatcacgtgccgcatttccagccaattcaagaacctga 77  Q
    |||||||||||||||| || || ||||| ||||||||||| |||||||| |||||||||||||| ||||||||||||    
T  41257863 ccaacaacacgtgcctagggatgatcctgttcttcttgttgtcacgtgctgcatttccagccaactcaagaacctga 41257787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 8e-62; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 164 - 375
Target Start/End: Complemental strand, 24298145 - 24297931
Alignment:
Q  164 tcagcagcaagatattcaagaacagcggcgaggtaaacaggagcaccagtaccaacacgctgagcgtatcttcctttcttcaagtaccgaccgattcttc 263  Q
    ||||||||||||||||||||||| || || ||||| || |||||||| || || |||||||||||||||||||||||||||||||| | |||||||||||    
T  24298145 tcagcagcaagatattcaagaactgctgctaggtataccggagcacctgttccgacacgctgagcgtatcttcctttcttcaagtatctaccgattcttc 24298046  T
Q  264 caactggaaattgaagaccagctctgatggatctggtcacagacttcttccttggtcctccacctttccttccaccagctcctttcttcgt---cttggt 360  Q
    | ||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||   ||| |     
T  24298045 ccactggaaattgaagaccggctctgattgatcttgtcaccgacttcttccttggtcctcctcctttccttccaccggctcccttcttcgttgcctttgg 24297946  T
Q  361 gcttgcgtccatttc 375  Q
    |||||||||||||||    
T  24297945 gcttgcgtccatttc 24297931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 161 - 375
Target Start/End: Original strand, 23423596 - 23423813
Alignment:
Q  161 acctcagcagcaagatattcaagaacagcggcgaggtaaacaggagcaccagtaccaacacgctgagcgtatcttcctttcttcaagtaccgaccgattc 260  Q
    ||||||||||| |||||||||||||| || || ||||| || |||||||| || || |||||||||||||||||||||||||||||||| | ||||||||    
T  23423596 acctcagcagcgagatattcaagaactgctgctaggtatactggagcacctgtgcctacacgctgagcgtatcttcctttcttcaagtatctaccgattc 23423695  T
Q  261 ttccaactggaaattgaagaccagctctgatggatctggtcacagacttcttccttggtcctccacctttccttccaccagctcctttct---tcgtctt 357  Q
    ||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||| || ||||| ||||   | |||||    
T  23423696 ttccaaccggaaattgaagaccagctctgatggatcttgtcaccgacttcttccttggtcctcctcccttccttcctcctgctcccttctttgttgtctt 23423795  T
Q  358 ggtgcttgcgtccatttc 375  Q
    ||||||||| ||||||||    
T  23423796 ggtgcttgcctccatttc 23423813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 161 - 375
Target Start/End: Complemental strand, 23875357 - 23875140
Alignment:
Q  161 acctcagcagcaagatattcaagaacagcggcgaggtaaacaggagcaccagtaccaacacgctgagcgtatcttcctttcttcaagtaccgaccgattc 260  Q
    ||||||||||| |||||||||||||| || || ||||| || |||||||| || || |||||||||||||||||||||||||||||||| | ||||||||    
T  23875357 acctcagcagcgagatattcaagaactgctgctaggtatactggagcacctgtgcctacacgctgagcgtatcttcctttcttcaagtatctaccgattc 23875258  T
Q  261 ttccaactggaaattgaagaccagctctgatggatctggtcacagacttcttccttggtcctccacctttccttccaccagctcctttct---tcgtctt 357  Q
    |||| ||||||||||||||||| |||||||| ||||| ||||| |||||||||||||| ||||| |||||||||||||| ||||| ||||   | |||||    
T  23875257 ttcccactggaaattgaagaccggctctgattgatcttgtcaccgacttcttccttggacctcctcctttccttccaccggctcccttctttgttgtctt 23875158  T
Q  358 ggtgcttgcgtccatttc 375  Q
    ||||||||| ||||||||    
T  23875157 ggtgcttgcctccatttc 23875140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 161 - 351
Target Start/End: Original strand, 23448096 - 23448286
Alignment:
Q  161 acctcagcagcaagatattcaagaacagcggcgaggtaaacaggagcaccagtaccaacacgctgagcgtatcttcctttcttcaagtaccgaccgattc 260  Q
    ||||||||||| |||||||||||||| || || ||||| || |||||||| || || |||||||||||||||||||||||||||||||| | ||||||||    
T  23448096 acctcagcagcgagatattcaagaactgctgctaggtatactggagcacctgtgcctacacgctgagcgtatcttcctttcttcaagtatctaccgattc 23448195  T
Q  261 ttccaactggaaattgaagaccagctctgatggatctggtcacagacttcttccttggtcctccacctttccttccaccagctcctttctt 351  Q
    |||| ||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||| |||| || ||||||||||| |||||||||||    
T  23448196 ttcccactggaaattgaagaccggctctgattgatcttgtcaccgacttcttccttggttctcctcccttccttccaccggctcctttctt 23448286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 161 - 374
Target Start/End: Complemental strand, 26827909 - 26827693
Alignment:
Q  161 acctcagcagcaagatattcaagaacagcggcgaggtaaacaggagcaccagtaccaacacgctgagcgtatcttcctttcttcaagtaccgaccgattc 260  Q
    ||||||||||| || ||||||||||| || || |||||||| |||||||| || || ||||||||||| ||||  |||||||||| ||| || |||||||    
T  26827909 acctcagcagcgaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacgctgagcatatcgacctttcttcaggtaacggccgattc 26827810  T
Q  261 ttccaactggaaattgaagaccagctctgatggatctggtcacagacttcttccttggtcctccacctttccttccaccagctcctttct---tcgtctt 357  Q
    |||| ||||| ||||| || || |||||||||||||| ||||| |||||||||||||| ||||| || ||||||||||| ||||||||||   | |||||    
T  26827809 ttccgactgggaattggagtccggctctgatggatcttgtcaccgacttcttccttggacctcctcccttccttccaccggctcctttctttgttgtctt 26827710  T
Q  358 ggtgcttgcgtccattt 374  Q
    |||||||||||||||||    
T  26827709 ggtgcttgcgtccattt 26827693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 23423525 - 23423599
Alignment:
Q  1 ccaacaacacgtgccttggaattatcctattcttcttgttatcacgtgccgcatttccagccaattcaagaacct 75  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  23423525 ccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacct 23423599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 23448025 - 23448099
Alignment:
Q  1 ccaacaacacgtgccttggaattatcctattcttcttgttatcacgtgccgcatttccagccaattcaagaacct 75  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  23448025 ccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacct 23448099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 23875428 - 23875354
Alignment:
Q  1 ccaacaacacgtgccttggaattatcctattcttcttgttatcacgtgccgcatttccagccaattcaagaacct 75  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  23875428 ccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacct 23875354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 24298219 - 24298147
Alignment:
Q  1 ccaacaacacgtgccttggaattatcctattcttcttgttatcacgtgccgcatttccagccaattcaagaac 73  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||    
T  24298219 ccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaac 24298147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 23446673 - 23446743
Alignment:
Q  3 aacaacacgtgccttggaattatcctattcttcttgttatcacgtgccgcatttccagccaattcaagaac 73  Q
    |||||||  ||||||||||| || |||||||||||||||||||| || |||||||||||||| ||||||||    
T  23446673 aacaacaaatgccttggaataattctattcttcttgttatcacgagctgcatttccagccaactcaagaac 23446743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 26827980 - 26827906
Alignment:
Q  1 ccaacaacacgtgccttggaattatcctattcttcttgttatcacgtgccgcatttccagccaattcaagaacct 75  Q
    |||||||||  ||||||||||| || |||||||||||||||||||| || || ||||| ||||||||||||||||    
T  26827980 ccaacaacaaatgccttggaatgattctattcttcttgttatcacgagcagcgtttcctgccaattcaagaacct 26827906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 23446745 - 23446809
Alignment:
Q  164 tcagcagcaagatattcaagaacagcggcgaggtaaacaggagcaccagtaccaacacgctgagc 228  Q
    ||||||||||||||||||||||| || || ||||| || |||||||| || || |||||||||||    
T  23446745 tcagcagcaagatattcaagaactgctgccaggtatactggagcaccggttccgacacgctgagc 23446809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 164 - 374
Target Start/End: Complemental strand, 35961688 - 35961475
Alignment:
Q  164 tcagcagcaagatattcaagaacagcggcgaggtaaacaggagcaccagtaccaacacgctgagcgtatcttcctttcttcaagtaccgaccgattcttc 263  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||| || || ||||| ||||| ||||  |||||||||||||| || ||||||||||    
T  35961688 tcagcagcaagatattcaagaacagcggctaagtaaacaggagcaccggtgccgacacgttgagcatatcgacctttcttcaagtaacggccgattcttc 35961589  T
Q  264 caactggaaattgaagaccagctctgatggatctggtcacagacttcttccttggtcctccacctttccttccaccagctcctttcttcgt---cttggt 360  Q
    | ||||| |||||||| || |||||||| ||||| || || |||||||||||||||||||| ||||| ||||| || ||||||||||||||   ||| ||    
T  35961588 ccactgggaattgaagtccggctctgattgatcttgttaccgacttcttccttggtcctccgccttttcttcctcctgctcctttcttcgttgcctttgt 35961489  T
Q  361 gcttgcgtccattt 374  Q
    ||||||||||||||    
T  35961488 gcttgcgtccattt 35961475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 35961762 - 35961690
Alignment:
Q  1 ccaacaacacgtgccttggaattatcctattcttcttgttatcacgtgccgcatttccagccaattcaagaac 73  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||||||    
T  35961762 ccaacaacacatgccttggaataatcctattcttcttgttatcacgagcagcattaccagccaattcaagaac 35961690  T

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Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 12165178 - 12165104
Alignment:
Q  1 ccaacaacacgtgccttggaattatcctattcttcttgttatcacgtgccgcatttccagccaattcaagaacct 75  Q
    |||||||||| ||||||||||| || |||||||||||||||||||| || |||||||||||||| ||||||||||    
T  12165178 ccaacaacacatgccttggaatgattctattcttcttgttatcacgagctgcatttccagccaactcaagaacct 12165104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 46584569 - 46584524
Alignment:
Q  30 ttcttcttgttatcacgtgccgcatttccagccaattcaagaacct 75  Q
    |||||||||||||| | ||| ||||| |||||||||||||||||||    
T  46584569 ttcttcttgttatctcttgcagcattcccagccaattcaagaacct 46584524  T

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