View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0226-INSERTION-12 (Length: 447)

Name: NF0226-INSERTION-12
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0226-INSERTION-12
NF0226-INSERTION-12
[»] chr5 (9 HSPs)
chr5 (1-185)||(1496201-1496384)
chr5 (304-447)||(1496063-1496207)
chr5 (199-304)||(1495334-1495439)
chr5 (260-405)||(1482721-1482865)
chr5 (263-401)||(1499771-1499908)
chr5 (303-414)||(1478569-1478680)
chr5 (328-404)||(1505572-1505648)
chr5 (326-404)||(1492761-1492839)
chr5 (307-418)||(1509697-1509808)
[»] chr7 (6 HSPs)
chr7 (326-404)||(5289148-5289226)
chr7 (326-404)||(5310990-5311068)
chr7 (326-404)||(5315704-5315782)
chr7 (326-397)||(5284901-5284972)
chr7 (326-396)||(5303089-5303159)
chr7 (326-397)||(46706446-46706517)
[»] chr1 (3 HSPs)
chr1 (326-405)||(44129167-44129246)
chr1 (326-405)||(44133372-44133451)
chr1 (326-405)||(44141794-44141873)


Alignment Details
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 1496201 - 1496384
Alignment:
Q  1 ggtttgagagtaaaaatggtcctcaaaagttttcatgaggttatttgacatatctgccacccaactccaacatgtcacggacacaaccagaaagaagcca 100  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1496201 ggtttgagagtaaaaatggtcctcaaa-gttatcatgaggttatttgacatatctgccacccaactccaacatgtcacggacacaaccagaaagaagcca 1496299  T
Q  101 tagtatttgttgagttacactttcaaaaacactacaccacatttctaggtatagtcggttttagatggcttatttgaggttggaa 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1496300 tagtatttgttgagttacactttcaaaaacactacaccacatttctaggtatagtcggttttagatggcttatttgaggttggaa 1496384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 304 - 447
Target Start/End: Original strand, 1496063 - 1496207
Alignment:
Q  304 ttccaaccattaaacatcttcaattacaactcaatcttctggattgctcatccgagtggacttgcaattatagatcaagttgagcacaagttaggcttaa 403  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1496063 ttccaaccattaaacatcttcaattacaacccaatcttctggattgctcatccgagtggacctgcaattatagatcaagttgagcacaagttaggcttaa 1496162  T
Q  404 aatatgaaaaatgaatatcactgtgccgtaaa-caaaaggtttga 447  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  1496163 aatatgaaaaatgaatatcactgtgccgtaaaccaaaaggtttga 1496207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 199 - 304
Target Start/End: Original strand, 1495334 - 1495439
Alignment:
Q  199 aattgctctacgcaatgaaggtagccttcacttcgtgaagttgggctaacattcatgtttgtgggattttctcaatgartattgataaagcattaactga 298  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  1495334 aattgctccacgcaatgaaggtggccttcacttcgtgaagttgggctaacattcatgttcgtgggattttctcaatgaatattgataaagcattaactga 1495433  T
Q  299 agcatt 304  Q
    ||||||    
T  1495434 agcatt 1495439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 260 - 405
Target Start/End: Original strand, 1482721 - 1482865
Alignment:
Q  260 tgggattttctcaatgartattgataaagcattaactgaagcatttccaaccattaaacatcttcaattacaactcaatcttctggattgctcatccgag 359  Q
    ||||||| | |||| ||  |||||||||||||| |  || || |||||||||||||||||| |   |||||||||||||||| ||||||||||||||  |    
T  1482721 tgggattgtttcaaagaacattgataaagcattgatcgatgc-tttccaaccattaaacatttctgattacaactcaatcttttggattgctcatccagg 1482819  T
Q  360 tggacttgcaattatagatcaagttgagcacaagttaggcttaaaa 405  Q
    |||||  |||||| | ||||||||||| || |||||||||||||||    
T  1482820 tggacccgcaattcttgatcaagttgaacaaaagttaggcttaaaa 1482865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 263 - 401
Target Start/End: Original strand, 1499771 - 1499908
Alignment:
Q  263 gattttctcaatgartattgataaagcattaactgaagcatttccaaccattaaacatcttcaattacaactcaatcttctggattgctcatccgagtgg 362  Q
    |||| |||||| || ||||||||||| | ||  ||| ||||||| ||||||||   ||||   |||| ||||||||||| ||||||||||||||| ||||    
T  1499771 gattgtctcaaagaatattgataaagtactagttgaggcatttc-aaccattaggaatctctgattataactcaatcttttggattgctcatccgggtgg 1499869  T
Q  363 acttgcaattatagatcaagttgagcacaagttaggctt 401  Q
     | ||||||| |||||||| ||||||| |||||||||||    
T  1499870 tcctgcaattctagatcaaattgagcaaaagttaggctt 1499908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 303 - 414
Target Start/End: Original strand, 1478569 - 1478680
Alignment:
Q  303 tttccaaccattaaacatcttcaattacaactcaatcttctggattgctcatccgagtggacttgcaattatagatcaagttgagcacaagttaggctta 402  Q
    ||||||||||||||||||||   |||| || |||||||||||||||||||| ||  ||||||  |||||| |||| ||||||||  | ||||||||||||    
T  1478569 tttccaaccattaaacatctctgattataattcaatcttctggattgctcacccaggtggacccgcaattctagaccaagttgaagaaaagttaggctta 1478668  T
Q  403 aaatatgaaaaa 414  Q
    |||  |||||||    
T  1478669 aaacctgaaaaa 1478680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 404
Target Start/End: Original strand, 1505572 - 1505648
Alignment:
Q  328 tacaactcaatcttctggattgctcatccgagtggacttgcaattatagatcaagttgagcacaagttaggcttaaa 404  Q
    ||||||||||||||||||||||| || ||  |||| | ||||||| |||||||||| ||||| ||||||| ||||||    
T  1505572 tacaactcaatcttctggattgcacaccctggtggccctgcaattttagatcaagtagagcaaaagttagccttaaa 1505648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 404
Target Start/End: Original strand, 1492761 - 1492839
Alignment:
Q  326 attacaactcaatcttctggattgctcatccgagtggacttgcaattatagatcaagttgagcacaagttaggcttaaa 404  Q
    |||||||||||||||| |||||||| || ||  |||||| ||||||| |||| ||||| ||||| ||||||| ||||||    
T  1492761 attacaactcaatcttttggattgcacaccctggtggacctgcaattttagaccaagtagagcaaaagttagccttaaa 1492839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 418
Target Start/End: Original strand, 1509697 - 1509808
Alignment:
Q  307 caaccattaaacatcttcaattacaactcaatcttctggattgctcatccgagtggacttgcaattatagatcaagttgagcacaagttaggcttaaaat 406  Q
    ||||||||||||||||   ||||||||||||| || ||||||||||| ||   ||||   |||||||| || ||||||||||| || |||| |||||||     
T  1509697 caaccattaaacatctctgattacaactcaatattttggattgctcacccagatggagccgcaattattgaccaagttgagcaaaaattagccttaaaac 1509796  T
Q  407 atgaaaaatgaa 418  Q
     ||||| |||||    
T  1509797 ctgaaagatgaa 1509808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 326 - 404
Target Start/End: Complemental strand, 5289226 - 5289148
Alignment:
Q  326 attacaactcaatcttctggattgctcatccgagtggacttgcaattatagatcaagttgagcacaagttaggcttaaa 404  Q
    |||||||||||||||| |||||||| |||||  |||||| ||||||| |||||||||| ||||| ||||||| ||||||    
T  5289226 attacaactcaatcttttggattgcacatcccggtggacctgcaattctagatcaagtggagcaaaagttagccttaaa 5289148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 326 - 404
Target Start/End: Original strand, 5310990 - 5311068
Alignment:
Q  326 attacaactcaatcttctggattgctcatccgagtggacttgcaattatagatcaagttgagcacaagttaggcttaaa 404  Q
    |||||||||||||||| |||||||| |||||  |||||| ||||||| |||||||||| ||||| ||||||| ||||||    
T  5310990 attacaactcaatcttttggattgcacatcccggtggacctgcaattctagatcaagtagagcaaaagttagccttaaa 5311068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 326 - 404
Target Start/End: Original strand, 5315704 - 5315782
Alignment:
Q  326 attacaactcaatcttctggattgctcatccgagtggacttgcaattatagatcaagttgagcacaagttaggcttaaa 404  Q
    |||||||||||||||| |||||||| |||||  |||||| ||||||| |||||||||| ||||| ||||||| ||||||    
T  5315704 attacaactcaatcttttggattgcacatcccggtggacctgcaattctagatcaagtggagcaaaagttagccttaaa 5315782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 5284901 - 5284972
Alignment:
Q  326 attacaactcaatcttctggattgctcatccgagtggacttgcaattatagatcaagttgagcacaagttag 397  Q
    |||||||||||||||| |||||||| |||||  |||||| ||||||| |||||||||| ||||| |||||||    
T  5284901 attacaactcaatcttttggattgcacatcccggtggacctgcaattctagatcaagtagagcaaaagttag 5284972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 326 - 396
Target Start/End: Original strand, 5303089 - 5303159
Alignment:
Q  326 attacaactcaatcttctggattgctcatccgagtggacttgcaattatagatcaagttgagcacaagtta 396  Q
    |||||||||||||||| |||||||| |||||  |||||| ||||||| |||||||||| ||||| ||||||    
T  5303089 attacaactcaatcttttggattgcacatcccggtggacctgcaattctagatcaagtagagcaaaagtta 5303159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 46706517 - 46706446
Alignment:
Q  326 attacaactcaatcttctggattgctcatccgagtggacttgcaattatagatcaagttgagcacaagttag 397  Q
    |||||||||||||||| |||||||| || ||  |||| | ||||||| |||||||||| ||||| |||||||    
T  46706517 attacaactcaatcttttggattgcacaccctggtggccctgcaattttagatcaagtagagcaaaagttag 46706446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 405
Target Start/End: Original strand, 44129167 - 44129246
Alignment:
Q  326 attacaactcaatcttctggattgctcatccgagtggacttgcaattatagatcaagttgagcacaagttaggcttaaaa 405  Q
    ||||||| |||||||| |||||||| || ||  |||||| ||||||| |||||||||||||||| ||||||| |||||||    
T  44129167 attacaattcaatcttttggattgcacaccctggtggacctgcaattctagatcaagttgagcaaaagttagccttaaaa 44129246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 405
Target Start/End: Original strand, 44133372 - 44133451
Alignment:
Q  326 attacaactcaatcttctggattgctcatccgagtggacttgcaattatagatcaagttgagcacaagttaggcttaaaa 405  Q
    ||||||| |||||||| |||||||| || ||  |||||| ||||||| |||||||||||||||| ||||||| |||||||    
T  44133372 attacaattcaatcttttggattgcacaccctggtggacctgcaattctagatcaagttgagcaaaagttagccttaaaa 44133451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 405
Target Start/End: Original strand, 44141794 - 44141873
Alignment:
Q  326 attacaactcaatcttctggattgctcatccgagtggacttgcaattatagatcaagttgagcacaagttaggcttaaaa 405  Q
    ||||||| |||||||| |||||||| || ||  |||||| ||||||| |||||||||||||||| ||||||| |||||||    
T  44141794 attacaattcaatcttttggattgcacaccctggtggacctgcaattctagatcaagttgagcaaaagttagccttaaaa 44141873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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