View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226-INSERTION-14 (Length: 338)
Name: NF0226-INSERTION-14
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226-INSERTION-14
[» ] chr1 (2 HSPs)
[» ] scaffold0015 (1 HSPs)
Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 338
Target Start/End: Original strand, 24246978 - 24247299
Alignment:
Q
17
gtggaatttttgaagacggtagtttctttagttttctagttgaaggattccaaataacggtgatatgttcaccaatagcgaaacaaaggagaccgttgca
116
Q
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
T
24246978
gtggaatttttgaagacggtagtttctttaattttctagttgaaggattccaaataacggtgatatgttcaccaatagcgaaacaagggagaccgtcaca
24247077
T
Q
117
agaaccaacgagaatgcggctatagaacgtagtatttagttgataaagggaagagtggtcaaaggagaacgtggcatcagaggtgaaactagagttgagt
216
Q
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
T
24247078
agaaccaacgagaatgcggctatagaacgtagtatttagttgataaaggaaagagtgatcaaaggagaacgtggcatcagaggtgaaactagagttgagt
24247177
T
Q
217
tgaaaagagtccaatgggtaagacattacagttaactttggtgggaagttcaatgagcttgtgacgacatggtggcgtttggttgacactcgaaggtgtt
316
Q
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
T
24247178
tgaaaagagtccaatgggtaagacattacagttaactttggtgggtagttcaatgagcttgtgacgacatggtggcgtttggttgacactctaaggtgtt
24247277
T
Q
317
tatttgcaaaacttctatcaat
338
Q
||||||||||||||||||||||
T
24247278
tatttgcaaaacttctatcaat
24247299
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 24243489 - 24243567
Alignment:
Q
175
tcaaaggagaacgtggcatcagaggtgaaactagagttgagttgaaaagagtccaatgggtaagacattacagttaact
253
Q
|||||||||||| | |||| ||||||||||||| |||||| || |||||||||||| |||||| ||||| ||||||
T
24243489
tcaaaggagaacataccatcgtaggtgaaactagatatgagtttaagagagtccaatggataagacgttacacttaact
24243567
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 40989 - 41044
Alignment:
Q
195
agaggtgaaactagagttgagttgaaaagagtccaatgggtaagacattacagtta
250
Q
|||||| ||| |||||| |||||||| |||||| ||||| ||||||||||||||||
T
40989
agaggtaaaaatagagtcgagttgaagagagtcgaatggataagacattacagtta
41044
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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