View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0226-INSERTION-14 (Length: 338)
Name: NF0226-INSERTION-14
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0226-INSERTION-14 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 338
Target Start/End: Original strand, 24246978 - 24247299
Alignment:
| Q |
17 |
gtggaatttttgaagacggtagtttctttagttttctagttgaaggattccaaataacggtgatatgttcaccaatagcgaaacaaaggagaccgttgca |
116 |
Q |
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| T |
24246978 |
gtggaatttttgaagacggtagtttctttaattttctagttgaaggattccaaataacggtgatatgttcaccaatagcgaaacaagggagaccgtcaca |
24247077 |
T |
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| Q |
117 |
agaaccaacgagaatgcggctatagaacgtagtatttagttgataaagggaagagtggtcaaaggagaacgtggcatcagaggtgaaactagagttgagt |
216 |
Q |
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| T |
24247078 |
agaaccaacgagaatgcggctatagaacgtagtatttagttgataaaggaaagagtgatcaaaggagaacgtggcatcagaggtgaaactagagttgagt |
24247177 |
T |
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| Q |
217 |
tgaaaagagtccaatgggtaagacattacagttaactttggtgggaagttcaatgagcttgtgacgacatggtggcgtttggttgacactcgaaggtgtt |
316 |
Q |
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| T |
24247178 |
tgaaaagagtccaatgggtaagacattacagttaactttggtgggtagttcaatgagcttgtgacgacatggtggcgtttggttgacactctaaggtgtt |
24247277 |
T |
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| Q |
317 |
tatttgcaaaacttctatcaat |
338 |
Q |
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| T |
24247278 |
tatttgcaaaacttctatcaat |
24247299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 24243489 - 24243567
Alignment:
| Q |
175 |
tcaaaggagaacgtggcatcagaggtgaaactagagttgagttgaaaagagtccaatgggtaagacattacagttaact |
253 |
Q |
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| T |
24243489 |
tcaaaggagaacataccatcgtaggtgaaactagatatgagtttaagagagtccaatggataagacgttacacttaact |
24243567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 40989 - 41044
Alignment:
| Q |
195 |
agaggtgaaactagagttgagttgaaaagagtccaatgggtaagacattacagtta |
250 |
Q |
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| T |
40989 |
agaggtaaaaatagagtcgagttgaagagagtcgaatggataagacattacagtta |
41044 |
T |
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