View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226-INSERTION-16 (Length: 704)
Name: NF0226-INSERTION-16
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226-INSERTION-16
[» ] chr5 (1 HSPs)
[» ] chr7 (1 HSPs)
Alignment Details
Target: chr3 (Bit Score: 507; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Original strand, 33715957 - 33716540
Alignment:
Q
1
acaggttcatcatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattttaactatctgactcaggaaatttgacatctctgc
100
Q
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
T
33715957
acaggttcaacatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattccaactatctaactcaggaaatttgacatctctgc
33716056
T
Q
101
taacaattactttgttgctttttggaagatagattttatagacttttgaagatgagctatagcctacaaaaattttaggttctgctttcttcttgatttg
200
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
T
33716057
taacaattactttgttgctttttggaagatagattttatagacttttgaagatgagctatagcctacaaaagttttaggttctgctttcttcttgatttg
33716156
T
Q
201
ttcaaggacaacatcgacaacagaagatttaggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgttcccatatggcatca
300
Q
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
33716157
ttcaaggacaacatccacaacagaagatttaggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgttcccatatggcatca
33716256
T
Q
301
acttgtgcttttacttctgtaacatcctattttggttccaggcttt-ccctggaacaggttctttgacagattttgcagagtttccattgattgtatcga
399
Q
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
T
33716257
acttgtgcttttacttctgtaacatcctattttgattccaggctttcccctggaacaggttctttgacagattttgcagagtttccattgattgtatcga
33716356
T
Q
400
cggaactcatcactccccacaacgttcacgatagatggatggtggaggaacgcaacaccaacttgaatccttccttccttgtgtacaacaacatgttttt
499
Q
|||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
T
33716357
cggaactcatcact-cccgcaacgttcacaatagatggatggtggaggaacgcaacaccaacttgaatccttccttccttgtgtacaacaacatgttgtt
33716455
T
Q
500
cctcattcatcaaatccaaggcaaagctcttgcctttcatttgaacattgaccattttctatgttggcttgcatctttaatcacaca
586
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| | |||||||||||||||||||
T
33716456
cctcattcatcaaatccaaggcaaagctcttgcctttcatttgaacattgacca-tttgtatgtt-gtttgcatctttaatcacaca
33716540
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 611 - 704
Target Start/End: Original strand, 33720856 - 33720949
Alignment:
Q
611
ataagcattctctagcagttgagtaacactcaaaaggttttgattaattttaggaacatataagacatcagaaactagtttcaaacctaaaagg
704
Q
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
T
33720856
ataaccattctctagcggttgagtaacactcaaaaggttttgattaattttaggaacatataagacatcagaaattagtttcaaacctaaaagg
33720949
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 704
Target Start/End: Original strand, 28697460 - 28698161
Alignment:
Q
1
acaggttcatcatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattttaactatctgactcaggaaatttgacatctctgc
100
Q
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||
T
28697460
acaggttcatcatcaacatcttcattctcctcctgaaatttaaacttctcacaatcttcccaattccaacaatctgactcaagaaatttgacatctctgc
28697559
T
Q
101
taacaattactttgttgctttttggaagatagattttatagacttttgaagatgagctatagcctacaaaaattttaggttctgctttcttcttgatttg
200
Q
||||||||| ||| ||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||
T
28697560
taacaattattttattgctttgtggaagatagattctatagacttttgaagatgagttatagcctacaaaaatttcaggttctgttttcttcttgatttg
28697659
T
Q
201
ttcaaggacaacatcgacaacagaagatttaggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgttcccatatggcatca
300
Q
||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||
T
28697660
ttcaaggacaacatccacaacagaagatttaggcttgcttttaaaactgttaagaacgttattggacactcctttgttcatttgttcccatatggcatca
28697759
T
Q
301
acttgtgcttttacttctgtaacatcctattttggttccaggcttt-ccctggaacaggttctttgacagattttgcagagtttccattgattgtatcga
399
Q
||||||||||||||||| |||||||||| |||| |||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
T
28697760
acttgtgcttttacttcagtaacatcctgttttagttccaggatttcccctgaaacaggttctttgacagattttgcagagtttccattgattgtatcga
28697859
T
Q
400
cggaactcatcactccccacaacgttcacgatagatggatggtggaggaacgcaacaccaacttgaatccttccttccttgtgtacaacaacatgttttt
499
Q
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||| ||
T
28697860
cggaactcatcact-cccgcaacgttcacgatagatggatggtggaggaacgcaacaccaacctgaatccttccatccttgggtacaacaacatgttgtt
28697958
T
Q
500
cctcattcatcaaatccaaggcaaagctcttgcctttcatttgaacattgaccattttctatgttggcttgcatctttaatcacacannnnnnnncctcc
599
Q
||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||| ||||
T
28697959
cctcatttatcaaatccaaggaaaagctcttgcctttcatttgaacattgacca-tttctatgtt-gtttgcatctttaatcacacattttttatcctca
28698056
T
Q
600
aacaacactttataagcattctctagcagttgagtaacactcaaaaggttttgattaattttaggaacatataagacatcagaaactagtttcaaaccta
699
Q
|||||| | |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
T
28698057
aacaactccttataaccattctctagcagttgagtaacactcaaaaggttatgattaattttaggaacatataagacatcagaaattagtttcaaacctg
28698156
T
Q
700
aaagg
704
Q
|||||
T
28698157
aaagg
28698161
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 704
Target Start/End: Complemental strand, 628144 - 627428
Alignment:
Q
1
acaggttcatcatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattttaactatctgactcaggaaatttgacatctctgc
100
Q
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| ||||||||||||||||||
T
628144
acaggttcaccatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattccaaatatttgactcaagaaatttgacatctctgc
628045
T
Q
101
taacaattactttgttgctttttggaagatagattttatagacttttgaagatgagctatagcctacaaaaattttaggttctgctttcttcttgatttg
200
Q
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
T
628044
taacaattactttgttgctttgtggaagatagattctatagacttttgaagatgagctatagcctacaaaaatttcaggttctgttttcttcttgatttg
627945
T
Q
201
ttcaaggacaacatcgacaacagaagattt---------------aggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgt
285
Q
||||||||||||||| ||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
T
627944
ttcaaggacaacatccacatcagaagattttgatcttgattctataggcttgcttttaaaactgttaataacgttattggacactcctttattcatttgt
627845
T
Q
286
tcccatatggcatcaacttgtgcttttacttctgtaacatcctattttggttccaggctttccc-tggaacaggttctttgacagattttgcagagtttc
384
Q
|||||||||||||||||||||||||||||||| |||||||||| |||| ||| |||| |||||| || ||||||||||||||||||||||| ||||||||
T
627844
tcccatatggcatcaacttgtgcttttacttcagtaacatcctgttttagtttcaggatttcccctgaaacaggttctttgacagattttgtagagtttc
627745
T
Q
385
cattgattgtatcgacggaactcatcactccccacaacgttcacgatagatggatggtggaggaacgcaacaccaacttgaatccttccttccttgtgta
484
Q
||||||||||||| | |||||||||||||||| || |||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||| ||||
T
627744
cattgattgtatccatggaactcatcactcccg-cagcgttcacgatagatggatggtggaagaatgcaacaccaacctgaatccttccttccttatgta
627646
T
Q
485
caacaacatgtttttcctcattcatcaaatccaaggcaaagctcttgcctttcatttgaacattgaccattttctatgttggcttgcatctttaatcaca
584
Q
|| ||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||| || | |||||||| ||||||||
T
627645
cagcaacatgttgttcctcattcatcaaatccaaggaaaagctcttgcatttcatttgaacattgacca-tttctatatt-gtttgcatctgtaatcaca
627548
T
Q
585
cannnnnnnncctccaacaacactttataagcattctctagcagttgagtaacactcaaaaggttttgattaattttaggaacatataagacatcagaaa
684
Q
|| |||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
T
627547
cattttttatcctcaaacaacaccttataaccattctctagcagttgagtaacactcaaaaggttttgattaattttagaaacatataagacatcagaaa
627448
T
Q
685
ctagtttcaaacctaaaagg
704
Q
||||||||||||| |||||
T
627447
ttagtttcaaacctgaaagg
627428
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 3 - 385
Target Start/End: Complemental strand, 27711897 - 27711514
Alignment:
Q
3
aggttcatcatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattttaactatctgactcaggaaatttgacatctctgcta
102
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||
T
27711897
aggttcatcatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattccaactatctgactcaagaaatttgacatctatgcta
27711798
T
Q
103
acaattactttgttgctttttggaagatagattttatagacttttgaagatgagctatagcctacaaaaattttaggttctgctttcttcttgatttgtt
202
Q
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||
T
27711797
acaattactttgttgctttgtggaagatagattctatagacttttgaagatgagctataacctacaaaaatttcaggttctgttttcttcttgatttgta
27711698
T
Q
203
caaggacaacatcgacaacagaagatttaggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgttcccatatggcatcaac
302
Q
||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
T
27711697
caaggacaacatccacagcagaagatttaggcttgcttttaaaactgttaataacgttattggacaggcctttattcatttgttcccatatggcatcaac
27711598
T
Q
303
ttgtgcttttacttctgtaacatcctattttggttccaggcttt-ccctggaacaggttctttgacagattttgcagagtttcc
385
Q
||||||||||||||| |||||||||| ||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||
T
27711597
ttgtgcttttacttcagtaacatcctgttttggttccaggatttcccctggaacatgttctttgacagattttgcagagtttcc
27711514
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 6e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 225 - 318
Target Start/End: Complemental strand, 50793988 - 50793895
Alignment:
Q
225
agatttaggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgttcccatatggcatcaacttgtgcttttacttct
318
Q
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
T
50793988
agatttaggcttgcttttaaaactgctaataactttattggacacacctttattcatttgttcccatatggcatcaacttcagcttttacttct
50793895
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 319 - 397
Target Start/End: Complemental strand, 50793815 - 50793736
Alignment:
Q
319
gtaacatcctattttggttccaggctt-tccctggaacaggttctttgacagattttgcagagtttccattgattgtatc
397
Q
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
T
50793815
gtaacatcctgttttggttccaggcttgtccctggaacaggttctttgacagattttgcagaatttccattgattgtatc
50793736
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 50795050 - 50795007
Alignment:
Q
183
tgctttcttcttgatttgttcaaggacaacatcgacaacagaag
226
Q
|||||||||||||||||||||||||||| |||| ||| ||||||
T
50795050
tgctttcttcttgatttgttcaaggacagcatccacagcagaag
50795007
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
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