View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0226-INSERTION-16 (Length: 704)
Name: NF0226-INSERTION-16
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0226-INSERTION-16 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 507; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Original strand, 33715957 - 33716540
Alignment:
| Q |
1 |
acaggttcatcatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattttaactatctgactcaggaaatttgacatctctgc |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
33715957 |
acaggttcaacatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattccaactatctaactcaggaaatttgacatctctgc |
33716056 |
T |
|
| Q |
101 |
taacaattactttgttgctttttggaagatagattttatagacttttgaagatgagctatagcctacaaaaattttaggttctgctttcttcttgatttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33716057 |
taacaattactttgttgctttttggaagatagattttatagacttttgaagatgagctatagcctacaaaagttttaggttctgctttcttcttgatttg |
33716156 |
T |
|
| Q |
201 |
ttcaaggacaacatcgacaacagaagatttaggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgttcccatatggcatca |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33716157 |
ttcaaggacaacatccacaacagaagatttaggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgttcccatatggcatca |
33716256 |
T |
|
| Q |
301 |
acttgtgcttttacttctgtaacatcctattttggttccaggcttt-ccctggaacaggttctttgacagattttgcagagtttccattgattgtatcga |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33716257 |
acttgtgcttttacttctgtaacatcctattttgattccaggctttcccctggaacaggttctttgacagattttgcagagtttccattgattgtatcga |
33716356 |
T |
|
| Q |
400 |
cggaactcatcactccccacaacgttcacgatagatggatggtggaggaacgcaacaccaacttgaatccttccttccttgtgtacaacaacatgttttt |
499 |
Q |
| |
|
|||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33716357 |
cggaactcatcact-cccgcaacgttcacaatagatggatggtggaggaacgcaacaccaacttgaatccttccttccttgtgtacaacaacatgttgtt |
33716455 |
T |
|
| Q |
500 |
cctcattcatcaaatccaaggcaaagctcttgcctttcatttgaacattgaccattttctatgttggcttgcatctttaatcacaca |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| | ||||||||||||||||||| |
|
|
| T |
33716456 |
cctcattcatcaaatccaaggcaaagctcttgcctttcatttgaacattgacca-tttgtatgtt-gtttgcatctttaatcacaca |
33716540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 611 - 704
Target Start/End: Original strand, 33720856 - 33720949
Alignment:
| Q |
611 |
ataagcattctctagcagttgagtaacactcaaaaggttttgattaattttaggaacatataagacatcagaaactagtttcaaacctaaaagg |
704 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33720856 |
ataaccattctctagcggttgagtaacactcaaaaggttttgattaattttaggaacatataagacatcagaaattagtttcaaacctaaaagg |
33720949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 704
Target Start/End: Original strand, 28697460 - 28698161
Alignment:
| Q |
1 |
acaggttcatcatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattttaactatctgactcaggaaatttgacatctctgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| |
|
|
| T |
28697460 |
acaggttcatcatcaacatcttcattctcctcctgaaatttaaacttctcacaatcttcccaattccaacaatctgactcaagaaatttgacatctctgc |
28697559 |
T |
|
| Q |
101 |
taacaattactttgttgctttttggaagatagattttatagacttttgaagatgagctatagcctacaaaaattttaggttctgctttcttcttgatttg |
200 |
Q |
| |
|
||||||||| ||| ||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
28697560 |
taacaattattttattgctttgtggaagatagattctatagacttttgaagatgagttatagcctacaaaaatttcaggttctgttttcttcttgatttg |
28697659 |
T |
|
| Q |
201 |
ttcaaggacaacatcgacaacagaagatttaggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgttcccatatggcatca |
300 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28697660 |
ttcaaggacaacatccacaacagaagatttaggcttgcttttaaaactgttaagaacgttattggacactcctttgttcatttgttcccatatggcatca |
28697759 |
T |
|
| Q |
301 |
acttgtgcttttacttctgtaacatcctattttggttccaggcttt-ccctggaacaggttctttgacagattttgcagagtttccattgattgtatcga |
399 |
Q |
| |
|
||||||||||||||||| |||||||||| |||| |||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28697760 |
acttgtgcttttacttcagtaacatcctgttttagttccaggatttcccctgaaacaggttctttgacagattttgcagagtttccattgattgtatcga |
28697859 |
T |
|
| Q |
400 |
cggaactcatcactccccacaacgttcacgatagatggatggtggaggaacgcaacaccaacttgaatccttccttccttgtgtacaacaacatgttttt |
499 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||| || |
|
|
| T |
28697860 |
cggaactcatcact-cccgcaacgttcacgatagatggatggtggaggaacgcaacaccaacctgaatccttccatccttgggtacaacaacatgttgtt |
28697958 |
T |
|
| Q |
500 |
cctcattcatcaaatccaaggcaaagctcttgcctttcatttgaacattgaccattttctatgttggcttgcatctttaatcacacannnnnnnncctcc |
599 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||| |||| |
|
|
| T |
28697959 |
cctcatttatcaaatccaaggaaaagctcttgcctttcatttgaacattgacca-tttctatgtt-gtttgcatctttaatcacacattttttatcctca |
28698056 |
T |
|
| Q |
600 |
aacaacactttataagcattctctagcagttgagtaacactcaaaaggttttgattaattttaggaacatataagacatcagaaactagtttcaaaccta |
699 |
Q |
| |
|
|||||| | |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28698057 |
aacaactccttataaccattctctagcagttgagtaacactcaaaaggttatgattaattttaggaacatataagacatcagaaattagtttcaaacctg |
28698156 |
T |
|
| Q |
700 |
aaagg |
704 |
Q |
| |
|
||||| |
|
|
| T |
28698157 |
aaagg |
28698161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 704
Target Start/End: Complemental strand, 628144 - 627428
Alignment:
| Q |
1 |
acaggttcatcatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattttaactatctgactcaggaaatttgacatctctgc |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| |||||||||||||||||| |
|
|
| T |
628144 |
acaggttcaccatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattccaaatatttgactcaagaaatttgacatctctgc |
628045 |
T |
|
| Q |
101 |
taacaattactttgttgctttttggaagatagattttatagacttttgaagatgagctatagcctacaaaaattttaggttctgctttcttcttgatttg |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
628044 |
taacaattactttgttgctttgtggaagatagattctatagacttttgaagatgagctatagcctacaaaaatttcaggttctgttttcttcttgatttg |
627945 |
T |
|
| Q |
201 |
ttcaaggacaacatcgacaacagaagattt---------------aggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgt |
285 |
Q |
| |
|
||||||||||||||| ||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
627944 |
ttcaaggacaacatccacatcagaagattttgatcttgattctataggcttgcttttaaaactgttaataacgttattggacactcctttattcatttgt |
627845 |
T |
|
| Q |
286 |
tcccatatggcatcaacttgtgcttttacttctgtaacatcctattttggttccaggctttccc-tggaacaggttctttgacagattttgcagagtttc |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||| ||| |||| |||||| || ||||||||||||||||||||||| |||||||| |
|
|
| T |
627844 |
tcccatatggcatcaacttgtgcttttacttcagtaacatcctgttttagtttcaggatttcccctgaaacaggttctttgacagattttgtagagtttc |
627745 |
T |
|
| Q |
385 |
cattgattgtatcgacggaactcatcactccccacaacgttcacgatagatggatggtggaggaacgcaacaccaacttgaatccttccttccttgtgta |
484 |
Q |
| |
|
||||||||||||| | |||||||||||||||| || |||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
627744 |
cattgattgtatccatggaactcatcactcccg-cagcgttcacgatagatggatggtggaagaatgcaacaccaacctgaatccttccttccttatgta |
627646 |
T |
|
| Q |
485 |
caacaacatgtttttcctcattcatcaaatccaaggcaaagctcttgcctttcatttgaacattgaccattttctatgttggcttgcatctttaatcaca |
584 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||| || | |||||||| |||||||| |
|
|
| T |
627645 |
cagcaacatgttgttcctcattcatcaaatccaaggaaaagctcttgcatttcatttgaacattgacca-tttctatatt-gtttgcatctgtaatcaca |
627548 |
T |
|
| Q |
585 |
cannnnnnnncctccaacaacactttataagcattctctagcagttgagtaacactcaaaaggttttgattaattttaggaacatataagacatcagaaa |
684 |
Q |
| |
|
|| |||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
627547 |
cattttttatcctcaaacaacaccttataaccattctctagcagttgagtaacactcaaaaggttttgattaattttagaaacatataagacatcagaaa |
627448 |
T |
|
| Q |
685 |
ctagtttcaaacctaaaagg |
704 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
627447 |
ttagtttcaaacctgaaagg |
627428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 3 - 385
Target Start/End: Complemental strand, 27711897 - 27711514
Alignment:
| Q |
3 |
aggttcatcatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattttaactatctgactcaggaaatttgacatctctgcta |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |
|
|
| T |
27711897 |
aggttcatcatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattccaactatctgactcaagaaatttgacatctatgcta |
27711798 |
T |
|
| Q |
103 |
acaattactttgttgctttttggaagatagattttatagacttttgaagatgagctatagcctacaaaaattttaggttctgctttcttcttgatttgtt |
202 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
27711797 |
acaattactttgttgctttgtggaagatagattctatagacttttgaagatgagctataacctacaaaaatttcaggttctgttttcttcttgatttgta |
27711698 |
T |
|
| Q |
203 |
caaggacaacatcgacaacagaagatttaggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgttcccatatggcatcaac |
302 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27711697 |
caaggacaacatccacagcagaagatttaggcttgcttttaaaactgttaataacgttattggacaggcctttattcatttgttcccatatggcatcaac |
27711598 |
T |
|
| Q |
303 |
ttgtgcttttacttctgtaacatcctattttggttccaggcttt-ccctggaacaggttctttgacagattttgcagagtttcc |
385 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27711597 |
ttgtgcttttacttcagtaacatcctgttttggttccaggatttcccctggaacatgttctttgacagattttgcagagtttcc |
27711514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 6e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 225 - 318
Target Start/End: Complemental strand, 50793988 - 50793895
Alignment:
| Q |
225 |
agatttaggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgttcccatatggcatcaacttgtgcttttacttct |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
50793988 |
agatttaggcttgcttttaaaactgctaataactttattggacacacctttattcatttgttcccatatggcatcaacttcagcttttacttct |
50793895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 319 - 397
Target Start/End: Complemental strand, 50793815 - 50793736
Alignment:
| Q |
319 |
gtaacatcctattttggttccaggctt-tccctggaacaggttctttgacagattttgcagagtttccattgattgtatc |
397 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50793815 |
gtaacatcctgttttggttccaggcttgtccctggaacaggttctttgacagattttgcagaatttccattgattgtatc |
50793736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 50795050 - 50795007
Alignment:
| Q |
183 |
tgctttcttcttgatttgttcaaggacaacatcgacaacagaag |
226 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||| |||||| |
|
|
| T |
50795050 |
tgctttcttcttgatttgttcaaggacagcatccacagcagaag |
50795007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University