View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0226-INSERTION-17 (Length: 698)
Name: NF0226-INSERTION-17
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0226-INSERTION-17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 475; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Original strand, 32700613 - 32701168
Alignment:
| Q |
1 |
atctctataaaaatcagcaatgttccattgttctggagctttttccaacccattctcatcaacttccttttggccagtaaccttcttataaaatggtgcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
32700613 |
atctctataaaaatcagcaatgttccattgtgttggagctttttccaacccattctcatcaacttccttttggcgagtaaccttcttataaaatcgtgcc |
32700712 |
T |
|
| Q |
101 |
aatttgtacgaagcccgctataatcgaacactttgagcaccaccaagcagatacttgatgaaatccttagcttgctttgtaaattccacgccattgatga |
200 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
32700713 |
aatttgtatgaagcccgctttaatcgaacactttgagcaccaccaagcagatacttgatgaagtccctagctagctttgtaaattccacgccattgatga |
32700812 |
T |
|
| Q |
201 |
cataaatatactgcaaaagaggtaggatgttatcatatcagaaatggcacacaaccttgttaataatttcagttcataagtaatcctatataacgaggca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32700813 |
cataaatatactgcaaaagaggtaggatgttatcatatcagacatggcacacaaccttgttaataatttcagttcataagtaatcctatataaccaggca |
32700912 |
T |
|
| Q |
301 |
ttggaatatgaatgtgtcttttgtaatgcaatttatattcgaagttatcttaaattatctatgcaaaagtagccacaataacaaacatcagtttgttaga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32700913 |
ttggaatatgaatgtgtcttttgtaatgcaatttatattcgaagttatcttaaattatctatgcaaaagtagccacaataacaaacatcagtttgttaga |
32701012 |
T |
|
| Q |
401 |
tacttcacttctatgtttttccttattttttaacaagaaaata---aagatataagactaatgagtaaattaagtgagcttggaagcaattaggtactgc |
497 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32701013 |
tacttcacttctttgtttttccttattttttaacaagaaaataaagaagatgtaagactaatgagtaaattaagtgagcttggaagcaattaggtactgc |
32701112 |
T |
|
| Q |
498 |
tgcataatacacagttcatgaaaaacc--gagtgtaccacaaatataaagccaatt |
551 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32701113 |
ttcataatacacagttcatgaaaaaccgagagtgtaccacaaatataaagccaatt |
32701168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 548 - 698
Target Start/End: Original strand, 32700459 - 32700609
Alignment:
| Q |
548 |
aattctcaatctgcctcctatatgctcaaagcccccaaaaatacactaccggaagtgtgcatcctaagcacatcaggttcagcagtgtgggcatctagag |
647 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32700459 |
aattctcaatctgcctcctatatgctcaaagcccccaaaaatacactaccggaagtgtacatcctaagcacatcaggttcagaagtgtgggcatctagag |
32700558 |
T |
|
| Q |
648 |
cacggctcctaagttttactcacttgaatttggtttcatgtaattcctaag |
698 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32700559 |
cactgctcctaagttttactcatttgaatttggtttcatgtaattcctaag |
32700609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 548 - 607
Target Start/End: Complemental strand, 32300730 - 32300671
Alignment:
| Q |
548 |
aattctcaatctgcctcctatatgctcaaagcccccaaaaatacactaccggaagtgtgc |
607 |
Q |
| |
|
|||||||| | |||| ||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
32300730 |
aattctcattatgccccctatatgctcaaagccccaaaaaatacactaccggaagcgtgc |
32300671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 7e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 3956627 - 3956870
Alignment:
| Q |
8 |
taaaaatcagcaatgttccattgttctggagctttttccaacccattctcatcaacttccttttggccagtaaccttcttataaaatggtgccaatttgt |
107 |
Q |
| |
|
||||||||||| ||||||||| || |||| || |||||||||||| |||||||||||| ||||| ||||||| ||||||||||||| ||| |||||| |
|
|
| T |
3956627 |
taaaaatcagcgatgttccatcgtaatggacctgtttccaacccatcctcatcaacttcattttgcccagtaatcttcttataaaatcgtgaacatttgt |
3956726 |
T |
|
| Q |
108 |
acgaagcccgctataatcgaacactttgagcaccaccaagcagatacttgatgaaatccttagcttgctttgtaaattccacgccattgatgacataaat |
207 |
Q |
| |
|
| || ||||||| |||||||||||| |||| ||||||||||||||||||||||| ||| ||||| ||||||||| |||||| ||||||||||| ||||| |
|
|
| T |
3956727 |
aggatgcccgctttaatcgaacactctgagttccaccaagcagatacttgatgaagtccctagctagctttgtaagttccacaccattgatgacgtaaat |
3956826 |
T |
|
| Q |
208 |
atactgcaaaagaggtaggatgttatcatatcagaaatggcaca |
251 |
Q |
| |
|
|||||||||| | ||| |||| ||||||| ||| |||||||| |
|
|
| T |
3956827 |
gtactgcaaaacatgtatgatgcgatcatattagacatggcaca |
3956870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 618 - 698
Target Start/End: Original strand, 3956538 - 3956616
Alignment:
| Q |
618 |
catcaggttcagcagtgtgggcatctagagcacggctcctaagttttactcacttgaatttggtttcatgtaattcctaag |
698 |
Q |
| |
|
|||||||||||| | |||| ||||||||||| ||| ||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3956538 |
catcaggttcagaaatgtgagcatctagagct--gctactagtctttactcgtttgaatttggtttcatgtaattcctaag |
3956616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University