View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226-INSERTION-17 (Length: 698)
Name: NF0226-INSERTION-17
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226-INSERTION-17
Alignment Details
Target: chr8 (Bit Score: 475; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Original strand, 32700613 - 32701168
Alignment:
Q
1
atctctataaaaatcagcaatgttccattgttctggagctttttccaacccattctcatcaacttccttttggccagtaaccttcttataaaatggtgcc
100
Q
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
T
32700613
atctctataaaaatcagcaatgttccattgtgttggagctttttccaacccattctcatcaacttccttttggcgagtaaccttcttataaaatcgtgcc
32700712
T
Q
101
aatttgtacgaagcccgctataatcgaacactttgagcaccaccaagcagatacttgatgaaatccttagcttgctttgtaaattccacgccattgatga
200
Q
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||
T
32700713
aatttgtatgaagcccgctttaatcgaacactttgagcaccaccaagcagatacttgatgaagtccctagctagctttgtaaattccacgccattgatga
32700812
T
Q
201
cataaatatactgcaaaagaggtaggatgttatcatatcagaaatggcacacaaccttgttaataatttcagttcataagtaatcctatataacgaggca
300
Q
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
T
32700813
cataaatatactgcaaaagaggtaggatgttatcatatcagacatggcacacaaccttgttaataatttcagttcataagtaatcctatataaccaggca
32700912
T
Q
301
ttggaatatgaatgtgtcttttgtaatgcaatttatattcgaagttatcttaaattatctatgcaaaagtagccacaataacaaacatcagtttgttaga
400
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
32700913
ttggaatatgaatgtgtcttttgtaatgcaatttatattcgaagttatcttaaattatctatgcaaaagtagccacaataacaaacatcagtttgttaga
32701012
T
Q
401
tacttcacttctatgtttttccttattttttaacaagaaaata---aagatataagactaatgagtaaattaagtgagcttggaagcaattaggtactgc
497
Q
|||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
T
32701013
tacttcacttctttgtttttccttattttttaacaagaaaataaagaagatgtaagactaatgagtaaattaagtgagcttggaagcaattaggtactgc
32701112
T
Q
498
tgcataatacacagttcatgaaaaacc--gagtgtaccacaaatataaagccaatt
551
Q
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
T
32701113
ttcataatacacagttcatgaaaaaccgagagtgtaccacaaatataaagccaatt
32701168
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 548 - 698
Target Start/End: Original strand, 32700459 - 32700609
Alignment:
Q
548
aattctcaatctgcctcctatatgctcaaagcccccaaaaatacactaccggaagtgtgcatcctaagcacatcaggttcagcagtgtgggcatctagag
647
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
T
32700459
aattctcaatctgcctcctatatgctcaaagcccccaaaaatacactaccggaagtgtacatcctaagcacatcaggttcagaagtgtgggcatctagag
32700558
T
Q
648
cacggctcctaagttttactcacttgaatttggtttcatgtaattcctaag
698
Q
||| |||||||||||||||||| ||||||||||||||||||||||||||||
T
32700559
cactgctcctaagttttactcatttgaatttggtttcatgtaattcctaag
32700609
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 548 - 607
Target Start/End: Complemental strand, 32300730 - 32300671
Alignment:
Q
548
aattctcaatctgcctcctatatgctcaaagcccccaaaaatacactaccggaagtgtgc
607
Q
|||||||| | |||| ||||||||||||||||||| ||||||||||||||||||| ||||
T
32300730
aattctcattatgccccctatatgctcaaagccccaaaaaatacactaccggaagcgtgc
32300671
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 7e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 3956627 - 3956870
Alignment:
Q
8
taaaaatcagcaatgttccattgttctggagctttttccaacccattctcatcaacttccttttggccagtaaccttcttataaaatggtgccaatttgt
107
Q
||||||||||| ||||||||| || |||| || |||||||||||| |||||||||||| ||||| ||||||| ||||||||||||| ||| ||||||
T
3956627
taaaaatcagcgatgttccatcgtaatggacctgtttccaacccatcctcatcaacttcattttgcccagtaatcttcttataaaatcgtgaacatttgt
3956726
T
Q
108
acgaagcccgctataatcgaacactttgagcaccaccaagcagatacttgatgaaatccttagcttgctttgtaaattccacgccattgatgacataaat
207
Q
| || ||||||| |||||||||||| |||| ||||||||||||||||||||||| ||| ||||| ||||||||| |||||| ||||||||||| |||||
T
3956727
aggatgcccgctttaatcgaacactctgagttccaccaagcagatacttgatgaagtccctagctagctttgtaagttccacaccattgatgacgtaaat
3956826
T
Q
208
atactgcaaaagaggtaggatgttatcatatcagaaatggcaca
251
Q
|||||||||| | ||| |||| ||||||| ||| ||||||||
T
3956827
gtactgcaaaacatgtatgatgcgatcatattagacatggcaca
3956870
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 618 - 698
Target Start/End: Original strand, 3956538 - 3956616
Alignment:
Q
618
catcaggttcagcagtgtgggcatctagagcacggctcctaagttttactcacttgaatttggtttcatgtaattcctaag
698
Q
|||||||||||| | |||| ||||||||||| ||| ||| ||||||| ||||||||||||||||||||||||||||
T
3956538
catcaggttcagaaatgtgagcatctagagct--gctactagtctttactcgtttgaatttggtttcatgtaattcctaag
3956616
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
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