View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0226-INSERTION-18 (Length: 332)
Name: NF0226-INSERTION-18
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0226-INSERTION-18 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 28 - 306
Target Start/End: Original strand, 9880652 - 9880931
Alignment:
| Q |
28 |
gtggattcatcaatggaaagag-ggtgtgcccaaactagaagcaatttcaaaaagaaatgttggtctccaatattcttgggggaggttcataatttgaat |
126 |
Q |
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| T |
9880652 |
gtggattcatcaatggaaagagaggggtgcccaaactagaagtaatttcaaaaagaaatgttggtctccaatgctcttgggggaggttcataatttgaat |
9880751 |
T |
|
| Q |
127 |
ccaaacttgtgcatgtaaaagtttttgcttggaaggatggaagtcctttgtccaacacgaaaacctcaagatgcctggtttgagattcaacaaccttaaa |
226 |
Q |
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| T |
9880752 |
ccaaacttgtgcatgtaaaagtttttgcttggaaggatggaagtcctttgtccaacacgaaaacctcaagatgcctagtttgagattcaacaaccttaaa |
9880851 |
T |
|
| Q |
227 |
gaccataatttttgcatctctttaactgtgttgaatagaagtgcaaagaatcctttgcaaaggggcacaatatttgaatt |
306 |
Q |
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| T |
9880852 |
gaccataatttttgcatctctttaactgtgttgaatagaagtgcaaagaatcctttgcaaaggggcacaatattcgaatt |
9880931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 28 - 258
Target Start/End: Complemental strand, 23262960 - 23262731
Alignment:
| Q |
28 |
gtggattcatcaatggaaagagggtgtgcccaaactagaagcaatttcaaaaagaaatgttggtctccaatattcttgggggaggttcataatttgaatc |
127 |
Q |
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|||||||||||||||||||||||| | | ||| |||||| |||||||||||||| |||||||||||| |||| ||||| ||||||||||||||| ||||| |
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| T |
23262960 |
gtggattcatcaatggaaagaggg-gcgtccacactagatgcaatttcaaaaagcaatgttggtctctaatactcttgcgggaggttcataattcgaatc |
23262862 |
T |
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| Q |
128 |
caaacttgtgcatgtaaaagtttttgcttggaaggatggaagtcctttgtccaacacgaaaacctcaagatgcctggtttgagattcaacaaccttaaag |
227 |
Q |
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| T |
23262861 |
caaacttgtgcatgtgaaagtttttgcttggatggattgaagtcctttgtcgaacacgaaaacctcgatatgactggtttgagactcaactaccttaaag |
23262762 |
T |
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| Q |
228 |
accataatttttgcatctctttaactgtgtt |
258 |
Q |
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|||||| |||| ||||||||| ||||||||| |
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| T |
23262761 |
accatatttttcgcatctcttcaactgtgtt |
23262731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 11774945 - 11774901
Alignment:
| Q |
33 |
ttcatcaatggaaagagggtgtgcccaaactagaagcaatttcaaa |
78 |
Q |
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| T |
11774945 |
ttcatcaatggtaag-gggtgtgcccaaactagaggcaatttcaaa |
11774901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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