View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0226-INSERTION-20 (Length: 582)
Name: NF0226-INSERTION-20
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0226-INSERTION-20 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-169; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 32700617 - 32700211
Alignment:
| Q |
1 |
gagatgtccttaggaattacatgaaaccaaattcaaatgagtaaaacttaggagccgtgctctagatgcccacactgctgaacctgatgtgcttaggatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32700617 |
gagatgtccttaggaattacatgaaaccaaattcaaatgagtaaaacttaggagcagtgctctagatgcccacacttctgaacctgatgtgcttaggatg |
32700518 |
T |
|
| Q |
101 |
tacacttccggtagtgtatttttgggggctttgagcatataggaggcagattgagaatttagcaatttcttttgatatggttacaaatttttcgatacaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32700517 |
tacacttccggtagtgtatttttgggggctttgagcatataggaggcagattgagaatttagcaatttcttttgatatggttacaaatttttccatacaa |
32700418 |
T |
|
| Q |
201 |
acatataaccagtgcacagcgagcctaaaaattagaagcctttgtttgatgtaattagtggcaattaca-----------------ctgtgttaattaca |
283 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32700417 |
acatataaccagtgcacactgagcctaaaaattagaagcctttgtttgatgtaattagtggcaattacactggtttttcttgaggtctgtgttaattaca |
32700318 |
T |
|
| Q |
284 |
ctaaatatatgttatttgagaaattaccatgacattctttacnnnnnnncttcttctt-caagtgtcgtaacgtattgttcaagacataacatgtctttg |
382 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32700317 |
ctaaatatatgttatttgagaaattaccatgacattctttactttttttcttcttcttccaagtgtcgtaacgtattgttcaagacataacatgtctttg |
32700218 |
T |
|
| Q |
383 |
taacttt |
389 |
Q |
| |
|
||||||| |
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| T |
32700217 |
taacttt |
32700211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 32300676 - 32300732
Alignment:
| Q |
105 |
cttccggtagtgtatttttgggggctttgagcatataggaggcagattgagaattta |
161 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |||| | |||||||||| |
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| T |
32300676 |
cttccggtagtgtattttttggggctttgagcatatagggggcataatgagaattta |
32300732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 164 - 450
Target Start/End: Complemental strand, 3956455 - 3956155
Alignment:
| Q |
164 |
aatttcttttgatatggttacaaatttttcgatacaaacatataaccagtgcacagcgagcctaaaaattagaagcctttgtttgatgtaattagtggca |
263 |
Q |
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|||||||||| || |||||||||| ||||| |||||||| |||| ||||| |||| |||| ||||| ||||||||||||||||||||||||| |||||| |
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| T |
3956455 |
aatttctttttatgtggttacaaagttttcaatacaaacttatatccagtacacattgagcttaaaagttagaagcctttgtttgatgtaattggtggca |
3956356 |
T |
|
| Q |
264 |
attaca-----------------ctgtgttaattacactaaatatatgttatttgagaaattaccatgacattctttacnnnnnnncttcttcttcaagt |
346 |
Q |
| |
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|||||| | |||||||||||||||||||| |||||||| | ||||||| |||||||||||||| |||||| ||||| |
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| T |
3956355 |
attacatcgatttttatcgaggtcagtgttaattacactaaatatttgttatttaaaaaattacaatgacattctttacttacttttttcttc--caagt |
3956258 |
T |
|
| Q |
347 |
gtcgtaacgtattgttcaagacataacatgtctttgtaactttatgtatggatttgatactatttcttttgcagatacaaataggaggccagaataaaag |
446 |
Q |
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||||||||||||||||||||||||| ||||| ||| ||||| |||||||||||| |||| ||||| ||||| |||||||| ||||||| ||||| || |
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| T |
3956257 |
atcgtaacgtattgttcaagacataagatgtccttgcaacttcatgtatggatttaataccgtttctcttgcatatacaaatcagaggcca-aataagag |
3956159 |
T |
|
| Q |
447 |
gtaa |
450 |
Q |
| |
|
|||| |
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|
| T |
3956158 |
gtaa |
3956155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 3956624 - 3956538
Alignment:
| Q |
1 |
gagatgtccttaggaattacatgaaaccaaattcaaatgagtaaaacttaggagccgtgctctagatgcccacactgctgaacctgatg |
89 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||| |||| | |||||||||||| |
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| T |
3956624 |
gagatgtccttaggaattacatgaaaccaaattcaaacgagtaaagactagtagc--agctctagatgctcacatttctgaacctgatg |
3956538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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