View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226-INSERTION-20 (Length: 582)
Name: NF0226-INSERTION-20
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226-INSERTION-20
Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-169; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 32700617 - 32700211
Alignment:
Q
1
gagatgtccttaggaattacatgaaaccaaattcaaatgagtaaaacttaggagccgtgctctagatgcccacactgctgaacctgatgtgcttaggatg
100
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
T
32700617
gagatgtccttaggaattacatgaaaccaaattcaaatgagtaaaacttaggagcagtgctctagatgcccacacttctgaacctgatgtgcttaggatg
32700518
T
Q
101
tacacttccggtagtgtatttttgggggctttgagcatataggaggcagattgagaatttagcaatttcttttgatatggttacaaatttttcgatacaa
200
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
T
32700517
tacacttccggtagtgtatttttgggggctttgagcatataggaggcagattgagaatttagcaatttcttttgatatggttacaaatttttccatacaa
32700418
T
Q
201
acatataaccagtgcacagcgagcctaaaaattagaagcctttgtttgatgtaattagtggcaattaca-----------------ctgtgttaattaca
283
Q
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
T
32700417
acatataaccagtgcacactgagcctaaaaattagaagcctttgtttgatgtaattagtggcaattacactggtttttcttgaggtctgtgttaattaca
32700318
T
Q
284
ctaaatatatgttatttgagaaattaccatgacattctttacnnnnnnncttcttctt-caagtgtcgtaacgtattgttcaagacataacatgtctttg
382
Q
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
T
32700317
ctaaatatatgttatttgagaaattaccatgacattctttactttttttcttcttcttccaagtgtcgtaacgtattgttcaagacataacatgtctttg
32700218
T
Q
383
taacttt
389
Q
|||||||
T
32700217
taacttt
32700211
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 32300676 - 32300732
Alignment:
Q
105
cttccggtagtgtatttttgggggctttgagcatataggaggcagattgagaattta
161
Q
||||||||||||||||||| ||||||||||||||||||| |||| | ||||||||||
T
32300676
cttccggtagtgtattttttggggctttgagcatatagggggcataatgagaattta
32300732
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 164 - 450
Target Start/End: Complemental strand, 3956455 - 3956155
Alignment:
Q
164
aatttcttttgatatggttacaaatttttcgatacaaacatataaccagtgcacagcgagcctaaaaattagaagcctttgtttgatgtaattagtggca
263
Q
|||||||||| || |||||||||| ||||| |||||||| |||| ||||| |||| |||| ||||| ||||||||||||||||||||||||| ||||||
T
3956455
aatttctttttatgtggttacaaagttttcaatacaaacttatatccagtacacattgagcttaaaagttagaagcctttgtttgatgtaattggtggca
3956356
T
Q
264
attaca-----------------ctgtgttaattacactaaatatatgttatttgagaaattaccatgacattctttacnnnnnnncttcttcttcaagt
346
Q
|||||| | |||||||||||||||||||| |||||||| | ||||||| |||||||||||||| |||||| |||||
T
3956355
attacatcgatttttatcgaggtcagtgttaattacactaaatatttgttatttaaaaaattacaatgacattctttacttacttttttcttc--caagt
3956258
T
Q
347
gtcgtaacgtattgttcaagacataacatgtctttgtaactttatgtatggatttgatactatttcttttgcagatacaaataggaggccagaataaaag
446
Q
||||||||||||||||||||||||| ||||| ||| ||||| |||||||||||| |||| ||||| ||||| |||||||| ||||||| ||||| ||
T
3956257
atcgtaacgtattgttcaagacataagatgtccttgcaacttcatgtatggatttaataccgtttctcttgcatatacaaatcagaggcca-aataagag
3956159
T
Q
447
gtaa
450
Q
||||
T
3956158
gtaa
3956155
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 3956624 - 3956538
Alignment:
Q
1
gagatgtccttaggaattacatgaaaccaaattcaaatgagtaaaacttaggagccgtgctctagatgcccacactgctgaacctgatg
89
Q
||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||| |||| | ||||||||||||
T
3956624
gagatgtccttaggaattacatgaaaccaaattcaaacgagtaaagactagtagc--agctctagatgctcacatttctgaacctgatg
3956538
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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