View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226-INSERTION-3 (Length: 237)
Name: NF0226-INSERTION-3
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226-INSERTION-3
[» ] scaffold0006 (2 HSPs)
[» ] scaffold0069 (5 HSPs)
Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 17)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 13613916 - 13614115
Alignment:
Q
1
ctcatgaaattatcagctttggaaacttatgcaaggtggatgtttctatgtgccaaagcttgttatatatctttccatattcactatgtgtagatcttgg
100
Q
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
T
13613916
ctcatgaaattatcagctttggaaagttatgcaaggtggatgtttctatgtgccaaagcttgttatatatctttccatattcactatgcgtagatcttgg
13614015
T
Q
101
acatcttgaaatgcttgagatagagtcttgtggagtcaaggaaatcattgcaatggaagaaactggatcaatggaaattaattttaattttccccaattg
200
Q
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
T
13614016
acatcttgaaatgcttgagatagagtcttgtggagtcaaggaaattgttgcaatg---gaaactggatcaatggaaattaattttaattttccccaattg
13614112
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 19134903 - 19134701
Alignment:
Q
1
ctcatgaaattatcagctttggaaacttatgcaaggtggatgtttctatgtgccaaagcttgttatatatctttccatattcactatgtgtagatcttgg
100
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
T
19134903
ctcatgaaattatcagctttggaaacttatgcaaggtggatgtttctatgtgccaaagcttgttatatatctttccatattcgctatgtctagatcttgg
19134804
T
Q
101
acatcttgaaatgcttgagatagagtcttgtggagtcaaggaaatcattgcaatggaagaaactggatcaatggaaattaattttaattttccccaattg
200
Q
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| | ||||||||||||||||||
T
19134803
acatattgaaatgcttgagatagagtcttgtggagtcaaggaaattgttgcaatggaagaaactatatcaatggaaattcaatttaattttccccaattg
19134704
T
Q
201
aaa
203
Q
|||
T
19134703
aaa
19134701
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 15894451 - 15894258
Alignment:
Q
1
ctcatgaaattatcagctttggaaacttatgcaaggtggatgtttctatgtgccaaagcttgttatatatctttccatattcactatgtgtagatcttgg
100
Q
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
T
15894451
ctcatgaaattatcagctttggaaacttatgcaaggtggatgcttctatgtgccaaagcttgttatatatctttccatattcactatgcctagaacttgg
15894352
T
Q
101
acatcttgaaatgcttgagatagagtcttgtggagtcaaggaaatcattgcaatggaagaaactggatcaatggaaattaattttaattttccc
194
Q
|||||||||||||||||||||| | ||||| ||||| |||||||| ||||||||||||||||| | |||||||||||||||||||||||||||
T
15894351
acatcttgaaatgcttgagataaattcttgcggagtgaaggaaattgttgcaatggaagaaactaggtcaatggaaattaattttaattttccc
15894258
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 13554176 - 13554376
Alignment:
Q
1
ctcatgaaattatcagctttggaaacttatgcaaggtggatgtttctatgtgccaaagcttgttatatatctttccatattcactatgtgtagatcttg-
99
Q
|||||||||||||||||||||||||||||||||||||||| |||| |||||| |||| |||||||||||||||||||||||||||||| ||||||||||
T
13554176
ctcatgaaattatcagctttggaaacttatgcaaggtggacgtttatatgtgtcaaatcttgttatatatctttccatattcactatgcgtagatcttgt
13554275
T
Q
100
gacatcttgaaatgcttgagatagagtcttgtggagtcaaggaaatcattgcaatggaagaaactggatcaatggaaattaattttaattttccccaatt
199
Q
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| |||||||||| ||||||||||||||||||||
T
13554276
gacatcttgaaatgcttgagatcgagtcttgtggagtcaaggaaattgttgcaatggaagaaggtggaccaatggaaatcaattttaattttccccaatt
13554375
T
Q
200
g
200
Q
|
T
13554376
g
13554376
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 20379515 - 20379717
Alignment:
Q
1
ctcatgaaattatcagctttggaaacttatgcaaggtggatgtttctatgtgccaaagcttgttatatatctttccatattcactatgtgtagatcttgg
100
Q
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||
T
20379515
ctcatgaaattatcagctttggaaacttacacaaggtggatgtttctatgtgtcaaagcttgttatatgtctttccatattcactatgcccagatcttgg
20379614
T
Q
101
acatcttgaaatgcttgagatagagtcttgtggagtcaaggaaatcattgcaatggaagaaactggatcaatggaaattaattttaattttccccaattg
200
Q
|||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||||||||| | |||||||| |||||||||
T
20379615
acatcttgaaatgcttgagataagttcttgcggagtcaaggaaattgttgcaatggaagaaactgtatcaatggaaattcaatttaatttcccccaattg
20379714
T
Q
201
aaa
203
Q
|||
T
20379715
aaa
20379717
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 13518823 - 13519025
Alignment:
Q
1
ctcatgaaattatcagctttggaaacttatgcaaggtggatgtttctatgtgccaaagcttgttatatatctttccatattcactatgtgtagatcttgg
100
Q
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||
T
13518823
ctcatgaaattatcagctttggaaacttacacaaggtggatgtttctatgtgtcaaagcttgttatatgtctttccatattcactatgcccagatcttgg
13518922
T
Q
101
acatcttgaaatgcttgagatagagtcttgtggagtcaaggaaatcattgcaatggaagaaactggatcaatggaaattaattttaattttccccaattg
200
Q
|||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||| | ||||||||||| | |||||||| |||||||||
T
13518923
acatcttgaaatgcttgagataagttcttgcagagtcaaggaaattgttgcaatggaagaaactgtaacaatggaaattcaatttaatttcccccaattg
13519022
T
Q
201
aaa
203
Q
|||
T
13519023
aaa
13519025
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 13688355 - 13688557
Alignment:
Q
1
ctcatgaaattatcagctttggaaacttatgcaaggtggatgtttctatgtgccaaagcttgttatatatctttccatattcactatgtgtagatcttgg
100
Q
||||||||||||||||||||| ||||||| |||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| |||||||||
T
13688355
ctcatgaaattatcagctttgtaaacttacacaaggtggatgtttctttgtgtcaaagcttgttatatgtctttccatattcactatgcccagatcttgg
13688454
T
Q
101
acatcttgaaatgcttgagatagagtcttgtggagtcaaggaaatcattgcaatggaagaaactggatcaatggaaattaattttaattttccccaattg
200
Q
|||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||||||||| | |||||||| |||||||||
T
13688455
acatcttgaaatgcttgagataagttcttgcggagtcaaggaaattgttgcaatggaagaaactgtatcaatggaaattcaatttaatttcccccaattg
13688554
T
Q
201
aaa
203
Q
|||
T
13688555
aaa
13688557
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 20509049 - 20508847
Alignment:
Q
1
ctcatgaaattatcagctttggaaacttatgcaaggtggatgtttctatgtgccaaagcttgttatatatctttccatattcactatgtgtagatcttgg
100
Q
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||| |||||||||||||||||| |||||||||
T
20509049
ctcatgaaattatcagctttggaaacttacacaaggtggatgtttctatgtgtcaaagcctgttatatgtctttccatattcactatccccagatcttgg
20508950
T
Q
101
acatcttgaaatgcttgagatagagtcttgtggagtcaaggaaatcattgcaatggaagaaactggatcaatggaaattaattttaattttccccaattg
200
Q
|||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||||||||| | |||||||| |||||||||
T
20508949
acatcttgaaatgcttgagataagttcttgcggagtcaaggaaattgttgcaatggaagaaactgtatcaatggaaattcaatttaatttcccccaattg
20508850
T
Q
201
aaa
203
Q
|||
T
20508849
aaa
20508847
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 19177554 - 19177412
Alignment:
Q
1
ctcatgaaattatcagctttggaaacttatgcaaggtggatgtttctatgtgccaaagcttgttatatatctttccatattcactatgtgtagatcttgg
100
Q
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
T
19177554
ctcatgaaattattagctttggaaagttatgcaaggtggatgtttctatgtgccaaagcttgttatatatctttccatattcactatgcgtagatcttgg
19177455
T
Q
101
acatcttgaaatgcttgagatagagtcttgtggagtcaaggaa
143
Q
||||||| ||||||||||||| |||||||||||||||||||||
T
19177454
acatcttaaaatgcttgagatcgagtcttgtggagtcaaggaa
19177412
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 13438281 - 13438473
Alignment:
Q
1
ctcatgaaattatcagctttggaaacttatgcaaggtggatgtttctatgtgccaaagcttgttatatatctttccatattcactatgtgtagatcttgg
100
Q
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
T
13438281
ctcatgaaattatcagctttggaaagttatgcaaggtggatgtttctatgtgtcaaagcttgttatatatctttccatattcactatgcccagatcttgg
13438380
T
Q
101
acatcttgaaatgcttgagatagagtcttgtggagtcaaggaaatcattgcaatggaagaaactggatcaatggaaattaattttaattttccccaattg
200
Q
| | | ||||| ||||||| |||||||||||||| || ||||||| ||| || |||||||||||||||||||||||||||||||||||
T
13438381
aatt----------atcagataaagtcttgcggagtcaaggaaattgttccaatggaggaagctagatcaatggaaattaattttaattttccccaattg
13438470
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 16494444 - 16494249
Alignment:
Q
4
atgaaattatcagctttggaaacttatgcaaggtggatgtttctatgtgccaaagcttgttatatatctttccatattcactatgtgtagatcttggaca
103
Q
|||||||||| | ||||| |||||| |||| ||| ||||||| ||||| |||||||||| ||||||||||||||||||||| || |||||| ||
T
16494444
atgaaattattaactttgaaaacttgcgcaaagtgaatgtttccatgtgtcaaagcttgtcatatatctttccatattcactttgccaagatctccaact
16494345
T
Q
104
tcttgaaatgcttgagatagagtcttgtggagtcaaggaaatcattgcaatggaagaaactggatcaatggaaattaattttaattttccccaattgaa
202
Q
||| |||||||||| ||||| ||||||||| | ||| ||| ||||| |||||||| | |||||||||||| ||||||| |||||| ||||||||
T
16494344
tctacaaatgcttgaaatagactcttgtggatttgagggaattattgccatggaagaga---gatcaatggaaagtaatttttgttttcctcaattgaa
16494249
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 16447598 - 16447403
Alignment:
Q
4
atgaaattatcagctttggaaacttatgcaaggtggatgtttctatgtgccaaagcttgttatatatctttccatattcactatgtgtagatcttggaca
103
Q
|||||||| | | ||||| |||||| ||||| ||| | ||||| ||||| |||||||||| |||||||||||||| ||||||||| ||||||| |||
T
16447598
atgaaattgttaactttgaaaacttgtgcaaagtgaaagtttccatgtgtcaaagcttgtcatatatctttccattttcactatgccaagatcttcgact
16447499
T
Q
104
tcttgaaatgcttgagatagagtcttgtggagtcaaggaaatcattgcaatggaagaaactggatcaatggaaattaattttaattttccccaattgaa
202
Q
||| ||||| |||||| ||| ||||| |||| ||| ||| |||||||||||||||| |||||||||||| ||| ||| |||||| ||| ||||
T
16447498
tctagaaattcttgaggtagtatcttgcagagttgaggtaattattgcaatggaagaaa---gatcaatggaaagtaacttttgttttcctcaactgaa
16447403
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 195 - 237
Target Start/End: Original strand, 13613855 - 13613897
Alignment:
Q
195
caattgaaacgattgactttgtctggtttacccaaattgaagc
237
Q
||||||||| |||||||||||||||||||||||||||||||||
T
13613855
caattgaaaagattgactttgtctggtttacccaaattgaagc
13613897
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 195 - 237
Target Start/End: Original strand, 13554115 - 13554157
Alignment:
Q
195
caattgaaacgattgactttgtctggtttacccaaattgaagc
237
Q
|||||||||||||||||||||||| |||||||||||||||||
T
13554115
caattgaaacgattgactttgtctactttacccaaattgaagc
13554157
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 19342450 - 19342343
Alignment:
Q
5
tgaaattatcagctttggaaacttatgcaaggtggatgtttctatgtgccaaagcttgttatatatctttccatattcactatgtgtagatcttggacat
104
Q
||||||||||||||||||||| ||| | ||||||||||||| ||||||||||||||| |||| ||| || |||||||| ||||||| |||||
T
19342450
tgaaattatcagctttggaaaattagaaatagtggatgtttctaaatgccaaagcttgttaaatatattttcactatcactatgccaagatcttcgacat
19342351
T
Q
105
cttgaaat
112
Q
|| |||||
T
19342350
ctagaaat
19342343
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 237
Target Start/End: Original strand, 20379454 - 20379496
Alignment:
Q
195
caattgaaacgattgactttgtctggtttacccaaattgaagc
237
Q
||||||||| |||||||||||||| |||||||||||||||||
T
20379454
caattgaaaagattgactttgtctactttacccaaattgaagc
20379496
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 20509110 - 20509068
Alignment:
Q
195
caattgaaacgattgactttgtctggtttacccaaattgaagc
237
Q
||||||||| |||||||||||||| |||||||||||||||||
T
20509110
caattgaaaagattgactttgtctactttacccaaattgaagc
20509068
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 176655 - 176857
Alignment:
Q
1
ctcatgaaattatcagctttggaaacttatgcaaggtggatgtttctatgtgccaaagcttgttatatatctttccatattcactatgtgtagatcttgg
100
Q
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||
T
176655
ctcatgaaattatcagctttggaaacttatgcacagtggatgtttctatgtgtcaaagcttgttgtatatctttccatattcactatgcctagatcttgg
176754
T
Q
101
acatcttgaaatgcttgagatagagtcttgtggagtcaaggaaatcattgcaatggaagaaactggatcaatggaaattaattttaattttccccaattg
200
Q
|||||||||||||||| ||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||
T
176755
acatcttgaaatgcttaagatagagtcttgcggagtcaaggaaattgtttcaatggaagaaactggatcaatggatattaattttaattttccccaattg
176854
T
Q
201
aaa
203
Q
|||
T
176855
aaa
176857
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 61150 - 61352
Alignment:
Q
1
ctcatgaaattatcagctttggaaacttatgcaaggtggatgtttctatgtgccaaagcttgttatatatctttccatattcactatgtgtagatcttgg
100
Q
||||||||| ||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||| | |||||||
T
61150
ctcatgaaaatatcagctttggaaacttacacaaggtggatttttctatgtgtcaaagcttgttatatgtctttccatattcactatgcccaaatcttgg
61249
T
Q
101
acatcttgaaatgcttgagatagagtcttgtggagtcaaggaaatcattgcaatggaagaaactggatcaatggaaattaattttaattttccccaattg
200
Q
|||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| | ||||||||||| | |||||||| |||||||||
T
61250
acatcttgaaatgcttgagataagttcttgcggagtcaaggaaattgttgcaatggaagaaactgtaacaatggaaattcaatttaatttcccccaattg
61349
T
Q
201
aaa
203
Q
|||
T
61350
aaa
61352
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 38049830 - 38049628
Alignment:
Q
1
ctcatgaaattatcagctttggaaacttatgcaaggtggatgtttctatgtgccaaagcttgttatatatctttccatattcactatgtgtagatcttgg
100
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
T
38049830
ctcatgaaattatcagctttggaaacttatgcaaggtggatgtttctatgtgccaaagcttgttatatatctttccatattcactatgtctagatcttgg
38049731
T
Q
101
acatcttgaaatgcttgagatagagtcttgtggagtcaaggaaatcattgcaatggaagaaactggatcaatggaaattaattttaattttccccaattg
200
Q
|||||||||||||||| || || |||||| | |||||| ||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||
T
38049730
acatcttgaaatgcttaagttaatgtcttgcgaagtcaatgaaattgttgcaatggaagaagctggatcaatggagattaattttaattttccccaattg
38049631
T
Q
201
aaa
203
Q
|||
T
38049630
aaa
38049628
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 22271999 - 22271805
Alignment:
Q
1
ctcatgaaattatcagctttggaaacttatgcaaggtggatgtttctatgtgccaaagcttgttatatatctttccatattcactatgtgtagatcttgg
100
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
T
22271999
ctcatgaaattatcagctttggaaacttatgcaaggtggatgtttctatgtgccaaagcttgttatatatctttccatattcactatgcccagatcttcg
22271900
T
Q
101
acatcttgaaatgcttgagatagagtcttgtggagtcaaggaaatcattgcaatggaagaaactggatcaatggaaattaattttaattttcccc
195
Q
||||||||||| |||| ||||||||||||| ||||||| ||||| ||||||||||||||||||| || |||||||||||||||||||| ||||
T
22271899
acatcttgaaacgcttaagatagagtcttgcagagtcaaagaaattgttgcaatggaagaaactgggtccatggaaattaattttaatttccccc
22271805
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 136; Significance: 4e-71; HSPs: 5)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 44221 - 44420
Alignment:
Q
1
ctcatgaaattatcagctttggaaacttatgcaaggtggatgtttctatgtgccaaagcttgttatatatctttccatattcactatgtgtagatcttgg
100
Q
|||||||||||||| || ||||||||||| |||||||||||||||| |||| ||||||||||||||| ||||||||||| ||||||| |||||||||
T
44221
ctcatgaaattatcggcattggaaacttacacaaggtggatgtttctctgtgtcaaagcttgttatatgtctttccatatacactatgcccagatcttgg
44320
T
Q
101
acatcttgaaatgcttgagatagagtcttgtggagtcaaggaaatcattgcaatggaagaaactggatcaatggaaattaattttaattttccccaattg
200
Q
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
T
44321
acatcttgaaatgcttgagataagttcttgtggagtcaaggaaattgttgcaatggaagaaactggatcaatggaaattaattttaattttccccaattg
44420
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 59395 - 59506
Alignment:
Q
92
agatcttggacatcttgaaatgcttgagatagagtcttgtggagtcaaggaaatcattgcaatggaagaaactggatcaatggaaattaattttaatttt
191
Q
||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||||||||| | ||||||||
T
59395
agatcttggacatcttgaaatgcttgagataagttcttgcggagtcaaggaaattgttgcaatggaagaaactgtatcaatggaaattcaatttaatttc
59494
T
Q
192
ccccaattgaaa
203
Q
||||||||||||
T
59495
ccccaattgaaa
59506
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 49817 - 49883
Alignment:
Q
1
ctcatgaaattatcagctttggaaacttatgcaaggtggatgtttctatgtgccaaagcttgttata
67
Q
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
T
49817
ctcatgaaattatcagctttggaaacttacacaaggtggatgtttctatgtgtcaaagcttgttata
49883
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 237
Target Start/End: Original strand, 44160 - 44202
Alignment:
Q
195
caattgaaacgattgactttgtctggtttacccaaattgaagc
237
Q
||||||||| |||||||||||||| |||||||||||||||||
T
44160
caattgaaaagattgactttgtctactttacccaaattgaagc
44202
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 237
Target Start/End: Original strand, 49756 - 49798
Alignment:
Q
195
caattgaaacgattgactttgtctggtttacccaaattgaagc
237
Q
||||||||| |||||||||||||| |||||||||||||||||
T
49756
caattgaaaagattgactttgtctactttacccaaattgaagc
49798
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 20767377 - 20767175
Alignment:
Q
1
ctcatgaaattatcagctttggaaacttatgcaaggtggatgtttctatgtgccaaagcttgttatatatctttccatattcactatgtgtagatcttgg
100
Q
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||
T
20767377
ctcatgaaattatcagctttggaaacttacacaaggtggatgtttctatgtgtcaaagcttgttatatgtctttccatattcactatgcccagatcttgg
20767278
T
Q
101
acatcttgaaatgcttgagatagagtcttgtggagtcaaggaaatcattgcaatggaagaaactggatcaatggaaattaattttaattttccccaattg
200
Q
|||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||||||||| | |||||||| |||||||||
T
20767277
acatcttgaaatgcttgagataagttcttgcggagtcaaggaaattgttgcaatggaagaaactgtatcaatggaaattcaatttaatttcccccaattg
20767178
T
Q
201
aaa
203
Q
|||
T
20767177
aaa
20767175
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 20767438 - 20767396
Alignment:
Q
195
caattgaaacgattgactttgtctggtttacccaaattgaagc
237
Q
||||||||| |||||||||||||| |||||||||||||||||
T
20767438
caattgaaaagattgactttgtctactttacccaaattgaagc
20767396
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
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