View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0226-INSERTION-5 (Length: 309)

Name: NF0226-INSERTION-5
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0226-INSERTION-5
NF0226-INSERTION-5
[»] chr4 (5 HSPs)
chr4 (7-237)||(3651034-3651264)
chr4 (232-306)||(3651268-3651342)
chr4 (75-193)||(38466933-38467051)
chr4 (76-237)||(10196591-10196752)
chr4 (134-204)||(19462449-19462519)
[»] chr8 (1 HSPs)
chr8 (74-163)||(35349683-35349772)
[»] chr5 (1 HSPs)
chr5 (76-204)||(31941764-31941891)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 237
Target Start/End: Complemental strand, 3651264 - 3651034
Alignment:
Q  7 gctgcaaataatatcttcttcatacaaataatttaatcattttcatatgatcaaaaccaatgcatctgccattgtttctctctaccaaaacctcaaactc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3651264 gctgcaaataatatcttcttcatacaaataatttaatcattttcatatgatcaaaaccaatgcatctgccattgtttctctctaccaaaacctcaaactc 3651165  T
Q  107 gttggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgcttggcaaaacaaccatcccctaaaagtaaata 206  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3651164 attggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgcttggcaaaacaaccatcccctaaaagtaaata 3651065  T
Q  207 gatgaagaatcagcatcttaatcaatgaatt 237  Q
    |||||||||||||||||||||||||||||||    
T  3651064 gatgaagaatcagcatcttaatcaatgaatt 3651034  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 3651342 - 3651268
Alignment:
Q  232 tgaattcattcttttaagtttaaaacacttaaaaatgagttctcataataattttaagctaattatattcgtttc 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3651342 tgaattcattcttttaagtttaaaacacttaaaaatgagttctcataataattttaagctaattatattcgtttc 3651268  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 75 - 193
Target Start/End: Original strand, 38466933 - 38467051
Alignment:
Q  75 ccattgtttctctctaccaaaacctcaaactcgttggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgc 174  Q
    |||||||||||||| |||||||||||||| |||||| ||||||||||||||||||  || || ||||||||||| |||||||||||||| ||||| | |     
T  38466933 ccattgtttctctcaaccaaaacctcaaattcgttgtagttacggtccaccaacatagcatatcgaccaagttcatccccaaagtcatgaccaaaaaggg 38467032  T
Q  175 ttggcaaaacaaccatccc 193  Q
    ||||||| |||||||||||    
T  38467033 ttggcaatacaaccatccc 38467051  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 237
Target Start/End: Complemental strand, 10196752 - 10196591
Alignment:
Q  76 cattgtttctctctaccaaaacctcaaactcgttggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgct 175  Q
    ||||||| ||||| ||||||||||| ||||| ||  |||||   |||||||||  ||||||||| |||| || | ||||||||||||| ||||| || ||    
T  10196752 cattgttcctctcgaccaaaacctcgaactcattatagttagaatccaccaaccttgcgtagcgtccaatttggcccccaaagtcatgaccaaagattct 10196653  T
Q  176 tggcaaaacaaccatcccctaaaagtaaatagatgaagaatcagcatcttaatcaatgaatt 237  Q
    | || |||||||||| |||||| ||| |||| | |||||| ||  || ||||| ||||||||    
T  10196652 tagcgaaacaaccatgccctaatagtcaataaaagaagaaacaaaatgttaataaatgaatt 10196591  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 19462519 - 19462449
Alignment:
Q  134 gtagcgaccaagttcgtccccaaagtcatggccaaacatgcttggcaaaacaaccatcccctaaaagtaaa 204  Q
    |||||| |||| || ||| |||||||||||||||||||| |||||||||||||| || |||||| ||||||    
T  19462519 gtagcgtccaatttggtctccaaagtcatggccaaacattcttggcaaaacaactatgccctaatagtaaa 19462449  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 163
Target Start/End: Complemental strand, 35349772 - 35349683
Alignment:
Q  74 gccattgtttctctctaccaaaacctcaaactcgttggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatg 163  Q
    ||||||||||| ||| |||||||||||||| |||||| |||||| |||||||||||  || || ||||||||||| ||||||||||||||    
T  35349772 gccattgtttcgctcaaccaaaacctcaaattcgttgtagttacagtccaccaacatagcatatcgaccaagttcatccccaaagtcatg 35349683  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 204
Target Start/End: Original strand, 31941764 - 31941891
Alignment:
Q  76 cattgtttctctctaccaaaacctcaaactcgttggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgct 175  Q
    ||||||| ||||| ||||| ||||||||||| ||| |||||   |||||||    ||| ||||| |||| || ||| ||||||||||| |||||||| ||    
T  31941764 cattgttcctctcgaccaacacctcaaactcattgtagttagaatccaccagacttgcatagcgtccaatttggtctccaaagtcatgaccaaacattct 31941863  T
Q  176 tggcaaaacaaccatcccctaaaagtaaa 204  Q
    | ||||||||| ||| |||||| ||||||    
T  31941864 tcgcaaaacaa-cattccctaatagtaaa 31941891  T

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