View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226-INSERTION-7 (Length: 350)
Name: NF0226-INSERTION-7
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226-INSERTION-7
Alignment Details
Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 2 - 183
Target Start/End: Complemental strand, 26412136 - 26411955
Alignment:
Q
2
ttaacactaactagttagataatccgtacagttaatcacacaaatctagttagattccttgatctgagaaacatgcagggcataataacaaatttccaat
101
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
26412136
ttaacactaactagttagataatccgtacagttaatcacacaaatctagttagattccttgatctgagaaacatgcagggcataataacaaatttccaat
26412037
T
Q
102
aaaagaaggcagagtaatcaaaccaacggcacaattaattaatcagtactgtttgttatggtgacaatcttcaacacaattg
183
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
T
26412036
aaaagaaggcagagtaatcaaaccaacggcacaattaattaatcagtactgttcgttatggtgacaatcttcaacacaattg
26411955
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 178 - 350
Target Start/End: Complemental strand, 26412305 - 26412133
Alignment:
Q
178
caattggttggcactcccacaagaaaaaagtatagtgcattatatataaaacagattccaacatttcaaaaaccaacgtcttaaaaaacaggcgtatcta
277
Q
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
T
26412305
caattggttggtactcccacaagaaaaaagtatagtgcattatatataaaacagattccaacatttcagaaaccaacatcttaaaaaacaggcgtatcta
26412206
T
Q
278
aagtgacatataataagtgatggagacaaaagtttagcattctagaatgtgatgaaacttaagcagaacttaa
350
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
T
26412205
aagtgacatataataagtgatggagacaaaagtttagcattctagaatgtgatgaaacttaagaagaagttaa
26412133
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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