View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0226-INSERTION-7 (Length: 350)
Name: NF0226-INSERTION-7
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0226-INSERTION-7 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 2 - 183
Target Start/End: Complemental strand, 26412136 - 26411955
Alignment:
| Q |
2 |
ttaacactaactagttagataatccgtacagttaatcacacaaatctagttagattccttgatctgagaaacatgcagggcataataacaaatttccaat |
101 |
Q |
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| T |
26412136 |
ttaacactaactagttagataatccgtacagttaatcacacaaatctagttagattccttgatctgagaaacatgcagggcataataacaaatttccaat |
26412037 |
T |
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| Q |
102 |
aaaagaaggcagagtaatcaaaccaacggcacaattaattaatcagtactgtttgttatggtgacaatcttcaacacaattg |
183 |
Q |
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| T |
26412036 |
aaaagaaggcagagtaatcaaaccaacggcacaattaattaatcagtactgttcgttatggtgacaatcttcaacacaattg |
26411955 |
T |
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Target: chr2; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 178 - 350
Target Start/End: Complemental strand, 26412305 - 26412133
Alignment:
| Q |
178 |
caattggttggcactcccacaagaaaaaagtatagtgcattatatataaaacagattccaacatttcaaaaaccaacgtcttaaaaaacaggcgtatcta |
277 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
26412305 |
caattggttggtactcccacaagaaaaaagtatagtgcattatatataaaacagattccaacatttcagaaaccaacatcttaaaaaacaggcgtatcta |
26412206 |
T |
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| Q |
278 |
aagtgacatataataagtgatggagacaaaagtttagcattctagaatgtgatgaaacttaagcagaacttaa |
350 |
Q |
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| T |
26412205 |
aagtgacatataataagtgatggagacaaaagtttagcattctagaatgtgatgaaacttaagaagaagttaa |
26412133 |
T |
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