View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226-INSERTION-8 (Length: 307)
Name: NF0226-INSERTION-8
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226-INSERTION-8
[» ] chr4 (1 HSPs)
Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 29210556 - 29210250
Alignment:
Q
1
attgaataattcgaatgtgaatgatggaatgaataacaagtttaacctagttgatcagaattttgaacctaatttatgtaattcttctgcaatgccatcg
100
Q
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
29210556
attgaataatttgaatgtgaatgatggaatgaataacaagtttaacctagttgatcagaattttgaacctaatttatgtaattcttctgcaatgccatcg
29210457
T
Q
101
tcgggtttaggttcgggttctgtgttgtttcaaccttttgaagtgaataaaaaggatcaatttgtgtttcagagtaaaccagaagcttcggggacgaatt
200
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
T
29210456
tcgggtttaggttcgggttctgtgttgtttcaaccttttgaagtgaataaaaaggatcaatttgtgtttcagagtaaaccagaagcttcgggggcgaatt
29210357
T
Q
201
ttgttgagtttaaatcacatgggccgaagattggtggaaaagaagggaagctgaaggagaaaactgggaatatgaggatgaataaaagtagggtgaattt
300
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
29210356
ttgttgagtttaaatcacatgggccgaagattggtggaaaagaagggaagctgaaggagaaaactgggaatatgaggatgaataaaagtagggtgaattt
29210257
T
Q
301
gaagaat
307
Q
|||||||
T
29210256
gaagaat
29210250
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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