View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0226-INSERTION-9 (Length: 339)
Name: NF0226-INSERTION-9
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0226-INSERTION-9 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 5e-81; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 32700617 - 32700457
Alignment:
| Q |
1 |
gagatgtccttaggaattacatgaaaccaaattcaaatgagtaaaacttaggagccgtgctctagatgcccacactgctgaacctgatgtgcttaggatg |
100 |
Q |
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| T |
32700617 |
gagatgtccttaggaattacatgaaaccaaattcaaatgagtaaaacttaggagcagtgctctagatgcccacacttctgaacctgatgtgcttaggatg |
32700518 |
T |
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| Q |
101 |
tacacttccggtagtgtatttttgggggctttgagcatataggaggcagattgagaattta |
161 |
Q |
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| T |
32700517 |
tacacttccggtagtgtatttttgggggctttgagcatataggaggcagattgagaattta |
32700457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 155 - 339
Target Start/End: Complemental strand, 32700798 - 32700614
Alignment:
| Q |
155 |
gaatttacaaagcaagctaaggatttcatcaagtatctgcttggtggtgctcaaagtgttcgattatagcgggcttcgtacaaattggcaccattttata |
254 |
Q |
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| T |
32700798 |
gaatttacaaagctagctagggacttcatcaagtatctgcttggtggtgctcaaagtgttcgattaaagcgggcttcatacaaattggcacgattttata |
32700699 |
T |
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| Q |
255 |
agaaggttactggccaaaaggaagttgatgagaatgggttggaaaaagctccaaaacaatggaacattgctgatttttatagaga |
339 |
Q |
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| T |
32700698 |
agaaggttactcgccaaaaggaagttgatgagaatgggttggaaaaagctccaacacaatggaacattgctgatttttatagaga |
32700614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 32300676 - 32300733
Alignment:
| Q |
105 |
cttccggtagtgtatttttgggggctttgagcatataggaggcagattgagaatttac |
162 |
Q |
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| T |
32300676 |
cttccggtagtgtattttttggggctttgagcatatagggggcataatgagaatttac |
32300733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 159 - 333
Target Start/End: Complemental strand, 3956801 - 3956627
Alignment:
| Q |
159 |
ttacaaagcaagctaaggatttcatcaagtatctgcttggtggtgctcaaagtgttcgattatagcgggcttcgtacaaattggcaccattttataagaa |
258 |
Q |
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| T |
3956801 |
ttacaaagctagctagggacttcatcaagtatctgcttggtggaactcagagtgttcgattaaagcgggcatcctacaaatgttcacgattttataagaa |
3956702 |
T |
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| Q |
259 |
ggttactggccaaaaggaagttgatgagaatgggttggaaaaagctccaaaacaatggaacattgctgattttta |
333 |
Q |
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| T |
3956701 |
gattactgggcaaaatgaagttgatgaggatgggttggaaacaggtccattacgatggaacatcgctgattttta |
3956627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 3956624 - 3956538
Alignment:
| Q |
1 |
gagatgtccttaggaattacatgaaaccaaattcaaatgagtaaaacttaggagccgtgctctagatgcccacactgctgaacctgatg |
89 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||| |||| | |||||||||||| |
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| T |
3956624 |
gagatgtccttaggaattacatgaaaccaaattcaaacgagtaaagactagtagc--agctctagatgctcacatttctgaacctgatg |
3956538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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