View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226-INSERTION-9 (Length: 339)
Name: NF0226-INSERTION-9
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226-INSERTION-9
Alignment Details
Target: chr8 (Bit Score: 153; Significance: 5e-81; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 32700617 - 32700457
Alignment:
Q
1
gagatgtccttaggaattacatgaaaccaaattcaaatgagtaaaacttaggagccgtgctctagatgcccacactgctgaacctgatgtgcttaggatg
100
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
T
32700617
gagatgtccttaggaattacatgaaaccaaattcaaatgagtaaaacttaggagcagtgctctagatgcccacacttctgaacctgatgtgcttaggatg
32700518
T
Q
101
tacacttccggtagtgtatttttgggggctttgagcatataggaggcagattgagaattta
161
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
32700517
tacacttccggtagtgtatttttgggggctttgagcatataggaggcagattgagaattta
32700457
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 155 - 339
Target Start/End: Complemental strand, 32700798 - 32700614
Alignment:
Q
155
gaatttacaaagcaagctaaggatttcatcaagtatctgcttggtggtgctcaaagtgttcgattatagcgggcttcgtacaaattggcaccattttata
254
Q
||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||
T
32700798
gaatttacaaagctagctagggacttcatcaagtatctgcttggtggtgctcaaagtgttcgattaaagcgggcttcatacaaattggcacgattttata
32700699
T
Q
255
agaaggttactggccaaaaggaagttgatgagaatgggttggaaaaagctccaaaacaatggaacattgctgatttttatagaga
339
Q
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
T
32700698
agaaggttactcgccaaaaggaagttgatgagaatgggttggaaaaagctccaacacaatggaacattgctgatttttatagaga
32700614
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 32300676 - 32300733
Alignment:
Q
105
cttccggtagtgtatttttgggggctttgagcatataggaggcagattgagaatttac
162
Q
||||||||||||||||||| ||||||||||||||||||| |||| | |||||||||||
T
32300676
cttccggtagtgtattttttggggctttgagcatatagggggcataatgagaatttac
32300733
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 159 - 333
Target Start/End: Complemental strand, 3956801 - 3956627
Alignment:
Q
159
ttacaaagcaagctaaggatttcatcaagtatctgcttggtggtgctcaaagtgttcgattatagcgggcttcgtacaaattggcaccattttataagaa
258
Q
||||||||| ||||| ||| ||||||||||||||||||||||| |||| |||||||||||| ||||||| || ||||||| ||| ||||||||||||
T
3956801
ttacaaagctagctagggacttcatcaagtatctgcttggtggaactcagagtgttcgattaaagcgggcatcctacaaatgttcacgattttataagaa
3956702
T
Q
259
ggttactggccaaaaggaagttgatgagaatgggttggaaaaagctccaaaacaatggaacattgctgattttta
333
Q
| ||||||| ||||| |||||||||||| |||||||||||| || |||| || ||||||||| |||||||||||
T
3956701
gattactgggcaaaatgaagttgatgaggatgggttggaaacaggtccattacgatggaacatcgctgattttta
3956627
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 3956624 - 3956538
Alignment:
Q
1
gagatgtccttaggaattacatgaaaccaaattcaaatgagtaaaacttaggagccgtgctctagatgcccacactgctgaacctgatg
89
Q
||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||| |||| | ||||||||||||
T
3956624
gagatgtccttaggaattacatgaaaccaaattcaaacgagtaaagactagtagc--agctctagatgctcacatttctgaacctgatg
3956538
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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