View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_high_1 (Length: 495)
Name: NF0226_high_1
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_high_1
Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 30 - 391
Target Start/End: Original strand, 12881957 - 12882319
Alignment:
Q
30
gatggaatatgcggcgctacagaatatggcgggaattgttgatgggttgtggttgtgggaaaggatgaattgttgcagtgataggcctgagggtttgggg
129
Q
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
12881957
gatggaatatgcggcgctgcagaatatggcgggaattgttgatgggttgtggttgtgggaaaggatgaattgttgcagtgataggcctgagggtttgggg
12882056
T
Q
130
tttaggaaattgaatttgtgagagtagagtgattcgaaggtggagaaacatgttggtggaccaagaacaagtacttttggaagctctttggccattgaat
229
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
T
12882057
tttaggaaattgaatttgtgagagtagagtgattcgaaggtggagaaacatgttggtggaccaagaacaagtacttttggaaggtctttggccattgaat
12882156
T
Q
230
tttaaggatttgtggtgtttgagaaagggatgaaattagcactctcatttggatgacactcaaaactgtggctagaaactcctcttaatta-ttctctgt
328
Q
|||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
T
12882157
tttaaggatttgtggtgtttgagaaagggatgaacttagcacttttatttggatgacactcaaaactgtggctagaaactcctcttaattatttctctgt
12882256
T
Q
329
atcacttgtcttccatgaagcaccaacacgtcttagattagaagtattccggtgtcggataca
391
Q
|||||||| |||||||||||| | |||| | ||||||||||| ||||| ||||||||||||||
T
12882257
atcacttgacttccatgaagcgcgaacatgccttagattagacgtatttcggtgtcggataca
12882319
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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