View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_high_13 (Length: 266)
Name: NF0226_high_13
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_high_13
[» ] scaffold0400 (2 HSPs)
[» ] scaffold0365 (2 HSPs)
Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 15040044 - 15040263
Alignment:
Q
18
atgaataggcttaacaaattgaagattctgcagttaggtgataataatttcataggtcatttacctcacaatatatgtaatagtggaaagttaactgtgt
117
Q
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
T
15040044
atgaataggcttaacaaattgaagattctgcagtttggtgataataatttcataggtcatttacctcccaatatatgtagtagtggaaagttaactgtgt
15040143
T
Q
118
tctcggctagaaataatcagttcacaggtccaattccaaagagtttgaagaattgttcaagtctaaagagagtgagaattgaacaaaaccaacttgctgg
217
Q
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
T
15040144
tctcggctagaaatactcagttcacaggtccaattccaaagagtttgaagaattgttcaagtctaaagagagtgagacttgaacaaaaccaacttgctgg
15040243
T
Q
218
aaatataacagatagctttg
237
Q
||||||||||||||||||||
T
15040244
aaatataacagatagctttg
15040263
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 169
Target Start/End: Original strand, 14467130 - 14467242
Alignment:
Q
57
gataataatttcataggtcatttacctcacaatatatgtaatagtggaaagttaactgtgttctcggctagaaataatcagttcacaggtccaattccaa
156
Q
||||||||||||| |||||||||||||||||| |||||| | |||||||||||||| |||||| || || ||||| || |||||||| ||||||||||
T
14467130
gataataatttcacaggtcatttacctcacaacatatgtgctggtggaaagttaacttggttctccgccagcaataaccaattcacaggcccaattccaa
14467229
T
Q
157
agagtttgaagaa
169
Q
|||||||||||||
T
14467230
agagtttgaagaa
14467242
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 237
Target Start/End: Original strand, 15001433 - 15001614
Alignment:
Q
56
tgataataatttcataggtcatttacctcacaatatatgtaatagtggaaagttaactgtgttctcggctagaaataatcagttcacaggtccaattcca
155
Q
|||||||||||| | |||||||||||||||||||| ||||| |||| ||||||| ||||| | | | | ||| ||||||||||| | | |||||
T
15001433
tgataataattttgttggtcatttacctcacaatatttgtaacggtgggaagttaaaaatgttcactgttgcacttaaccagttcacaggcctagttcca
15001532
T
Q
156
aagagtttgaagaattgttcaagtctaaagagagtgagaattgaacaaaaccaacttgctggaaatataacagatagctttg
237
Q
|||||||||||||||| ||||| || | |||||||||| || ||||||||||||| |||||||||||||||| |||||||
T
15001533
gagagtttgaagaattgctcaagccttacgagagtgagacttcaacaaaaccaactgactggaaatataacagacagctttg
15001614
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 169
Target Start/End: Complemental strand, 14533528 - 14533418
Alignment:
Q
59
taataatttcataggtcatttacctcacaatatatgtaatagtggaaagttaactgtgttctcggctagaaataatcagttcacaggtccaattccaaag
158
Q
||||||||||| |||||||||||||| ||| || ||| | || ||||||||||| |||||| || || ||||| || |||||||| ||||||||||||
T
14533528
taataatttcacaggtcatttacctctcaacatttgtgctggtagaaagttaactaagttctccgccagcaataaccaattcacaggcccaattccaaag
14533429
T
Q
159
agtttgaagaa
169
Q
|||||||||||
T
14533428
agtttgaagaa
14533418
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 15016520 - 15016622
Alignment:
Q
135
cagttcacaggtccaattccaaagagtttgaagaattgttcaagtctaaagagagtgagaattgaacaaaaccaacttgctggaaatataacagatagct
234
Q
||||||||||| | | ||||| |||||||||||||||| ||||| || |||||| |||| |||||||||||||||| |||||||||||||| |||| |
T
15016520
cagttcacaggcctagttccagagagtttgaagaattgctcaagccttaagagactgaggcttgaacaaaaccaactgactggaaatataacaaatagtt
15016619
T
Q
235
ttg
237
Q
|||
T
15016620
ttg
15016622
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 14503270 - 14503424
Alignment:
Q
18
atgaataggcttaacaaattgaagattctgcagttaggtgataataatttcataggtcatttacctcacaatatatgtaatagtggaaagttaactgtgt
117
Q
||||||||| | | ||| ||||| ||| |||| ||| |||||||||||||||||| |||||||||||||| || ||| | |||||| ||| || |
T
14503270
atgaataggataaccaatttgaaaattttgcaattatctgataataatttcataggccatttacctcacaacatttgtgttggtggaatgttgacaaatt
14503369
T
Q
118
tctcggctagaaataatcagttcacaggtccaattccaaagagtttgaagaattg
172
Q
|| | ||||| ||||| || |||||||| ||||||||||||||||| ||||||||
T
14503370
tcactgctagtaataaccaattcacagggccaattccaaagagtttaaagaattg
14503424
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 15010405 - 15010499
Alignment:
Q
135
cagttcacaggtccaattccaaagagtttgaagaattgttcaagtctaaagagagtgagaattgaacaaaaccaacttgctggaaatataacaga
229
Q
||||||||||| | | ||||| |||||||||||||||| ||||| || | |||| |||| |||| |||||||||||| ||||||||||||||||
T
15010405
cagttcacaggcctagttccagagagtttgaagaattgctcaagccttacgagactgaggcttgatcaaaaccaacttactggaaatataacaga
15010499
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 237
Target Start/End: Original strand, 15024538 - 15024624
Alignment:
Q
151
ttccaaagagtttgaagaattgttcaagtctaaagagagtgagaattgaacaaaaccaacttgctggaaatataacagatagctttg
237
Q
||||| |||||||||||||||| | ||| || || |||||||| |||| ||||||||||| |||||||||||||| |||| ||||
T
15024538
ttccagagagtttgaagaattgcttaagccttaaaagagtgaggcttgatcaaaaccaactgactggaaatataacaaatagttttg
15024624
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 237
Target Start/End: Original strand, 15031879 - 15031965
Alignment:
Q
151
ttccaaagagtttgaagaattgttcaagtctaaagagagtgagaattgaacaaaaccaacttgctggaaatataacagatagctttg
237
Q
||||| |||||||||||||||| | ||| || || |||||||| |||| ||||||||||| |||||||||||||| |||| ||||
T
15031879
ttccagagagtttgaagaattgcttaagccttaaaagagtgaggcttgatcaaaaccaactgactggaaatataacaaatagttttg
15031965
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 15036441 - 15036519
Alignment:
Q
151
ttccaaagagtttgaagaattgttcaagtctaaagagagtgagaattgaacaaaaccaacttgctggaaatataacaga
229
Q
||||| |||||||||||||||| ||||| || ||||| |||| || | ||||||||||| ||||||||||||||||
T
15036441
ttccagagagtttgaagaattgctcaagccttgagagattgaggcttaaccaaaaccaactgactggaaatataacaga
15036519
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 58 - 237
Target Start/End: Original strand, 5819 - 5998
Alignment:
Q
58
ataataatttcataggtcatttacctcacaatatatgtaatagtggaaagttaactgtgttctcggctagaaataatcagttcacaggtccaattccaaa
157
Q
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||| |||| ||||| ||||||| |||| | |||||||
T
5819
ataataatttcacaggtcatttacctcacaatatatgtgttagtggaaagttaactcgtttctccactagtaataaccagttcattggtctagttccaaa
5918
T
Q
158
gagtttgaagaattgttcaagtctaaagagagtgagaattgaacaaaaccaacttgctggaaatataacagatagctttg
237
Q
|||||| || ||||| ||||| || |||||||||||| || ||||||||||||| ||| ||||||||||||||||||||
T
5919
gagtttaaaaaattgctcaagccttaagagagtgagacttcaacaaaaccaactgactgcaaatataacagatagctttg
5998
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 12099 - 12159
Alignment:
Q
50
gttaggtgataataatttcataggtcatttacctcacaatatatgtaatagtggaaagtta
110
Q
|||||||||||||||||||| |||||| ||||| ||||| || ||| |||||||||||||
T
12099
gttaggtgataataatttcacaggtcaattaccgcacaacatttgtgttagtggaaagtta
12159
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 58 - 237
Target Start/End: Original strand, 6463 - 6642
Alignment:
Q
58
ataataatttcataggtcatttacctcacaatatatgtaatagtggaaagttaactgtgttctcggctagaaataatcagttcacaggtccaattccaaa
157
Q
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||| |||| ||||| ||||||| |||| | |||||||
T
6463
ataataatttcacaggtcatttacctcacaatatatgtgttagtggaaagttaactcgtttctccactagtaataaccagttcattggtctagttccaaa
6562
T
Q
158
gagtttgaagaattgttcaagtctaaagagagtgagaattgaacaaaaccaacttgctggaaatataacagatagctttg
237
Q
|||||| || ||||| ||||| || |||||||||||| || ||||||||||||| ||| ||||||||||||||||||||
T
6563
gagtttaaaaaattgctcaagccttaagagagtgagacttcaacaaaaccaactgactgcaaatataacagatagctttg
6642
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 12742 - 12802
Alignment:
Q
50
gttaggtgataataatttcataggtcatttacctcacaatatatgtaatagtggaaagtta
110
Q
|||||||||||||||||||| |||||| ||||| ||||| || ||| |||||||||||||
T
12742
gttaggtgataataatttcacaggtcaattaccgcacaacatttgtgttagtggaaagtta
12802
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 14605297 - 14605397
Alignment:
Q
129
aataatcagttcacaggtccaattccaaagagtttgaagaattgttcaagtctaaagagagtgagaattgaacaaaaccaacttgctggaaatataacag
228
Q
||||| || |||||||| || |||||||||||||||||||||| || || | | || | ||| ||||||||||||||||| |||||||||||||||
T
14605297
aataaccacttcacaggctcagttccaaagagtttgaagaattgctctagcattattaggattagacttgaacaaaaccaacttactggaaatataacag
14605396
T
Q
229
a
229
Q
|
T
14605397
a
14605397
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 17847997 - 17848031
Alignment:
Q
196
ttgaacaaaaccaacttgctggaaatataacagat
230
Q
||||||||||||||||| |||||||||||||||||
T
17847997
ttgaacaaaaccaactttctggaaatataacagat
17848031
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
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