View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_high_15 (Length: 257)
Name: NF0226_high_15
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_high_15
Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 42798220 - 42798446
Alignment:
Q
1
tttgaaggtttaattttta-tttaatttaatatcttaaaactgatccaatttctatttgatttgtatgaatgctctcttttgtcgattctgtgtagaaat
99
Q
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
T
42798220
tttgaaggtttaatttttaatttaatttaatatcttaaaactgatccaatttctatttaatttgtatgaatgctct--tttgtcgattctgtgtagaaat
42798317
T
Q
100
agcttatatttgggaagcttgtatgaatcacagattaaaatttagcagacatgatagaatcacatattaatattggaacatgttactactttgtcaacat
199
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
T
42798318
agcttatatttgggaagcttgtatgaatcacagattaaaatttagcagacatgatagaatcacatattaatattggaagatgttactactttgtcaacat
42798417
T
Q
200
tgtagttaatgtagttataagttcattta
228
Q
|||||||||||||||||||||||||||||
T
42798418
tgtagttaatgtagttataagttcattta
42798446
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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