View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_high_21 (Length: 210)
Name: NF0226_high_21
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_high_21
Alignment Details
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 42 - 192
Target Start/End: Original strand, 6915171 - 6915322
Alignment:
Q
42
agaacctgtgtcagaggtagatgatgtacttgctgaagcgtttct-agcgatgatgagaacatttcagctgctgaccttgagggagcaattcgtagggct
140
Q
|||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
T
6915171
agaaactgtgtcagaggtagatgatgtacttgctgaagcgtttcttagtgatgatgagaacatttcagctgctgaccttgagggagcaattcgtagggct
6915270
T
Q
141
accatagcacggaaatttataccggtattcatgggtagtgctgtcaaaaaca
192
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||
T
6915271
accatagcacggaaatttataccggtattcatgggtagtgctgtcaaaaaca
6915322
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 10492833 - 10492777
Alignment:
Q
125
agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgc
181
Q
||||||||||||||| |||||||||| |||||| ||||||| ||||||||||||||
T
10492833
agcaattcgtagggcaaccatagcacataaatttgtaccggttttcatgggtagtgc
10492777
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 28105350 - 28105402
Alignment:
Q
130
ttcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgct
182
Q
|||||||||| |||||||||||||| |||||||| ||||||||||||| ||||
T
28105350
ttcgtagggccaccatagcacggaagtttataccagtattcatgggtaatgct
28105402
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 10463648 - 10463585
Alignment:
Q
125
agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaaa
188
Q
|||||||||||| || || |||||||||||||||||||| | ||||||||||||||| |||||
T
10463648
agcaattcgtagagccacgatagcacggaaatttataccatttttcatgggtagtgctttcaaa
10463585
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 188
Target Start/End: Complemental strand, 10507396 - 10507349
Alignment:
Q
141
accatagcacggaaatttataccggtattcatgggtagtgctgtcaaa
188
Q
||||||||||||||||||||||| ||||||||||| |||||| |||||
T
10507396
accatagcacggaaatttatacccgtattcatgggcagtgctttcaaa
10507349
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 10860758 - 10860707
Alignment:
Q
125
agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggt
176
Q
|||| ||||||||| ||||||||||||||||||||||| ||||||||||||
T
10860758
agcagttcgtagggtcaccatagcacggaaatttataccagtattcatgggt
10860707
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 10474223 - 10474161
Alignment:
Q
125
agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaa
187
Q
|||| |||||||||| |||||||||||||| |||||||| |||||||||| |||||| ||||
T
10474223
agcagttcgtagggccaccatagcacggaagtttataccaatattcatgggcagtgctttcaa
10474161
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 7476566 - 7476622
Alignment:
Q
125
agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgc
181
Q
|||||||| |||||| || ||||||| ||||||| ||||||| ||||||||||||||
T
7476566
agcaattcatagggcaactatagcacagaaatttgtaccggttttcatgggtagtgc
7476622
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 10848854 - 10848803
Alignment:
Q
125
agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggt
176
Q
|||| |||||||||| |||||||||| ||||||||||| ||||||||||||
T
10848854
agcagttcgtagggccaccatagcacacaaatttataccagtattcatgggt
10848803
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 7478731 - 7478788
Alignment:
Q
125
agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgct
182
Q
|||| ||| |||||| |||| |||||| |||||||||||||| |||||||| ||||||
T
7478731
agcagttcttagggcaaccagagcacgcaaatttataccggtcttcatgggcagtgct
7478788
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 15045641 - 15045570
Alignment:
Q
121
agggagcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaaaaaca
192
Q
||||||| ||||||||||||||| | || ||||||||||||||||||||||||||||||||| |||||||||
T
15045641
agggagccattcgtagggctaccgtggcgcggaaatttataccggtattcatgggtagtgctttcaaaaaca
15045570
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 15047606 - 15047562
Alignment:
Q
42
agaacctgtgtcagaggtagatgatgtacttgctgaagcgtttct
86
Q
|||| ||||||||||||| |||||| ||||||| |||||||||||
T
15047606
agaaactgtgtcagaggttgatgatatacttgcggaagcgtttct
15047562
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 44307073 - 44307022
Alignment:
Q
126
gcaattcgtagggctaccatagcacggaaatttataccggtattcatgggta
177
Q
|||||||||||||| |||||||||||||||||| |||| | ||||||||||
T
44307073
gcaattcgtagggcaaccatagcacggaaatttgtaccaattttcatgggta
44307022
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 42010360 - 42010328
Alignment:
Q
1
cattggtgtttcagccaatactcgtgccacagt
33
Q
|||||||||||||||||||||||| ||||||||
T
42010360
cattggtgtttcagccaatactcgagccacagt
42010328
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1245698 - 1245666
Alignment:
Q
1
cattggtgtttcagccaatactcgtgccacagt
33
Q
|||||||||||||||||||||||| ||||||||
T
1245698
cattggtgtttcagccaatactcgagccacagt
1245666
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
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