View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_high_24 (Length: 201)
Name: NF0226_high_24
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_high_24
Alignment Details
Target: chr6 (Bit Score: 107; Significance: 8e-54; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 11019341 - 11019227
Alignment:
Q
1
tctctttaatatcctttccatggtccgattccatcaattccttaactctctcacccaactctgtgccactcacaaacctattttctgattggttcacttt
100
Q
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
11019341
tctctttaatatcctttccacggtccgattccatcaactccttaactctctcacccaactctgtgccactcacaaacctattttctgattggttcacttt
11019242
T
Q
101
caaagccaccttcat
115
Q
|||||||||||||||
T
11019241
caaagccaccttcat
11019227
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 11050430 - 11050343
Alignment:
Q
28
attccatcaattccttaactctctcacccaactctgtgccactcacaaacctattttctgattggttcactttcaaagccaccttcat
115
Q
|||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
T
11050430
attccatcaactccttaactctctcacccaattctgcgccactcacaaacctattttctgattggttcacttttaaagccaccttcat
11050343
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 11002934 - 11002883
Alignment:
Q
27
gattccatcaattccttaactctctcacccaactctgtgccactcacaaacc
78
Q
||||||||||| |||||||||||||| |||||||| | |||||||||||||
T
11002934
gattccatcaactccttaactctctcccccaactcatttccactcacaaacc
11002883
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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