View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0226_high_3 (Length: 461)
Name: NF0226_high_3
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0226_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 22 - 433
Target Start/End: Complemental strand, 50157566 - 50157149
Alignment:
| Q |
22 |
catcatcatcttgcttccaatgtattagggattttccaacctcttctaatctctagttttctctt------tcctatgatgttttatggtcaaatctgac |
115 |
Q |
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| T |
50157566 |
catcatcatcttgtttccaatgtattagggattttccaacctcttctaatctctagttttctcttggtgtctcctctgatgttttatggtcaaacctggc |
50157467 |
T |
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| Q |
116 |
cgaacagttgactcaaaaaatgtttgtcttctctcaactaaaacacaaggctagatgacttgtgttacaagtaatctcacgagacttgggctaaaacaac |
215 |
Q |
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| T |
50157466 |
cgaacagttggctcaaaaaaggtttgtcttctctcaactaaaacacaaggctagatgacttgtgttacaagtaatctcacgagacttgggctaaaacaac |
50157367 |
T |
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| Q |
216 |
taagctctaatcattttgtaaggtgaaaagcatcatgatagaaaaaacacaaggctataggacttgcattccagataatttcacgagacttgagttaaag |
315 |
Q |
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| T |
50157366 |
taagctctaatcagtttgtaaggtgaaaagcatcatgatagaaaaaacacaaggctataggacttgcattccagataatttcacgagacttgagttaaag |
50157267 |
T |
|
| Q |
316 |
caacaaagaccaaaacaattaagttccaacatccatgcactccgctctattatgttttgccaaccgagacagtgccttggagatcataattgcttgattt |
415 |
Q |
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| T |
50157266 |
caacaaagaccaaaacaattaagttccaacatccatgcactccgctctattatgttttgccaactgagacagtgccttggagattataattgcttgattt |
50157167 |
T |
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| Q |
416 |
cgattaaataattgaact |
433 |
Q |
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| T |
50157166 |
cgattaaataattgaact |
50157149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 27220112 - 27220058
Alignment:
| Q |
161 |
caaggctagatgacttgtgttacaagtaatctcacgagacttgggctaaaacaac |
215 |
Q |
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| T |
27220112 |
caaggctagatgacttgcattacaagtaatctcaagagacataggctaaaacaac |
27220058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 27214142 - 27214088
Alignment:
| Q |
161 |
caaggctagatgacttgtgttacaagtaatctcacgagacttgggctaaaacaac |
215 |
Q |
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| T |
27214142 |
caaggctagattacttgcattacaagtaatctcatgagacgtaggctaaaacaac |
27214088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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