View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_high_4 (Length: 460)
Name: NF0226_high_4
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_high_4
Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 30 - 254
Target Start/End: Original strand, 42677290 - 42677514
Alignment:
Q
30
tttggttcgtagaatttgaatcctgaggtagcaaaattgttgccgatactatgcacaattatttgctttgtgaacacatatatactacatgttttcgtgg
129
Q
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
T
42677290
tttggttcatagaatttgaatcctgaggtagcaaaattgttgccgatactatgcacaattatttgctttttgaacacatatatactacatgttttcgtgg
42677389
T
Q
130
taccttcagaacatgttcacgccatgtttgttttttaagtgtttgtaccgattctattatgaaccacgctagccatcaattgaaaaatattgtaagggga
229
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
T
42677390
taccttcagaacatgttcacgccatgtttgttttttaagtgtttgtaccgattctattgtgaaccacgctagccatcaattgaaaaatattgtaagggga
42677489
T
Q
230
ggttaattcatacagctttgtctaa
254
Q
|||||||||||||||||||||||||
T
42677490
ggttaattcatacagctttgtctaa
42677514
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 52835053 - 52835123
Alignment:
Q
39
tagaatttgaatc--ctgaggtagcaaaa-ttgttgccgatactatgcacaattatttgctttgtgaacac
106
Q
||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| | |||||||
T
52835053
tagaatttgaatctcctgaggtagcaaaaattgttgctgatactatgcacaattatttgctctttgaacac
52835123
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 62 - 148
Target Start/End: Complemental strand, 48968887 - 48968805
Alignment:
Q
62
aaaattgttgccgatactatgcacaattatttgctttgtgaacacatatatactacatgttttcgtggtaccttcagaacatgttca
148
Q
||||||||||| ||||||||||||||||||||||||| ||||||| ||||||| ||||| |||||||||||||||||||||||
T
48968887
aaaattgttgctgatactatgcacaattatttgctttttgaacac----ctactacaggtttttgtggtaccttcagaacatgttca
48968805
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 40900512 - 40900464
Alignment:
Q
195
acgctagccatcaattgaaaaatattgtaaggggaggttaattcataca
243
Q
||||||||||||||||| |||||||| || |||||||| |||||||||
T
40900512
acgctagccatcaattgggaaatattgcaaagggaggttcattcataca
40900464
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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