View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0226_high_7 (Length: 318)
Name: NF0226_high_7
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0226_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 31325644 - 31325730
Alignment:
| Q |
222 |
aattaatgttcttcgtagaaatagtatctatattcaatatgtgtattctttttcgtgtaaactctgcattaaatacggctattcatctc |
310 |
Q |
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| T |
31325644 |
aattaatgttcttcgtagaagttgtatctgtattcaatatgtgtattttttttagtgtaaactct--attaattacggctattcatctc |
31325730 |
T |
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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 31325521 - 31325599
Alignment:
| Q |
111 |
tagatgtagacccccttcccagctaggaattatgaaaaacacataaacgac--accaaattattgttcaaaaacagtaa |
187 |
Q |
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| T |
31325521 |
tagatgtagaccccattcccagctaggaattttgagaaacacacaaacgacataacaaattattgttcaaaaacagtaa |
31325599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 31325376 - 31325415
Alignment:
| Q |
29 |
aaattttgacacacattcaaaatcatctaatcaaaataag |
68 |
Q |
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| T |
31325376 |
aaattttgacacacattcaaaatcatctaatcaaaataag |
31325415 |
T |
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