View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_high_8 (Length: 314)
Name: NF0226_high_8
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_high_8
[» ] chr4 (1 HSPs)
Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 93 - 314
Target Start/End: Original strand, 42851991 - 42852210
Alignment:
Q
93
cagttcggttcagttcaatagtttgattcagtttttggttttcatgcctacccctagtaataatatttgatttgatgagacttnnnnnnnntatcaatct
192
Q
||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||
T
42851991
cagttcggtacagttcaatagtttggttcagtttttggtttttatgcctacccctagtaataatatttgatttgatgagacttaaaaaa--tatctatct
42852088
T
Q
193
ttaatgactttctctcctctatgtggggtcattagtagaagtttcaacatgaatgaatcaattgttcgagtttgaactcatgatctccaactccttatct
292
Q
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
T
42852089
ttaatgactttctctcctctatgtggggtcattaggggaagtttcagcatgaatgaatcaattgttcgagtttgaactcatgatctccaacttcttatct
42852188
T
Q
293
attagtttaaatcagttaagtt
314
Q
||||||||||||||||| ||||
T
42852189
attagtttaaatcagttgagtt
42852210
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 52422608 - 52422664
Alignment:
Q
93
cagttcggttcagttcaatagtttgattcagtttttggttttcatgcctacccctag
149
Q
||||||||||||||||||||||||| || ||||||||||||| ||||| ||||||||
T
52422608
cagttcggttcagttcaatagtttggtttagtttttggtttttatgcccacccctag
52422664
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 38256311 - 38256366
Alignment:
Q
93
cagttcggttcagttcaatagtttgattcagtttttggttttcatgcctaccccta
148
Q
|||||||||| ||||||| |||||| |||||||||||||||| ||||| |||||||
T
38256311
cagttcggtttagttcaacagtttggttcagtttttggtttttatgcccaccccta
38256366
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 16117476 - 16117524
Alignment:
Q
100
gttcagttcaatagtttgattcagtttttggttttcatgcctaccccta
148
Q
||||||||||| | |||| |||||||||||||||| ||||| |||||||
T
16117476
gttcagttcaacaatttggttcagtttttggtttttatgcccaccccta
16117524
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 3231503 - 3231539
Alignment:
Q
271
catgatctccaactccttatctattagtttaaatcag
307
Q
|||||||||||||||||||||| |||||| |||||||
T
3231503
catgatctccaactccttatctcttagttcaaatcag
3231539
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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