View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_high_9 (Length: 310)
Name: NF0226_high_9
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_high_9
Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 59 - 234
Target Start/End: Original strand, 44636061 - 44636236
Alignment:
Q
59
cacagacaaaaagttgcaagttttgcataaaaatatggggaaaaccccgtctatttgcagcagtaatctgattatttgtttgctccaatccatatatacg
158
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
T
44636061
cacagacaaaaagttgcaagttttgcataaaaatatggggaaaaccccgtctatttgtagcagtaatctgattatttgtttgctccaatccatatatacg
44636160
T
Q
159
gtaataagatggagtatcatttcatgtgcatagcaaagtataactataacgtgatggatctcatgcaaaatagtta
234
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
44636161
gtaataagatggagtatcatttcatgtgcatagcaaagtataactataacgtgatggatctcatgcaaaatagtta
44636236
T
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