View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0226_low_1 (Length: 539)
Name: NF0226_low_1
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0226_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 38 - 376
Target Start/End: Complemental strand, 30941830 - 30941492
Alignment:
| Q |
38 |
acactcatacaatagggtataattttcataattggaagtgtagttgaagaaatccaaatctaagtttacattgatgtatttctctggacaagaagcaata |
137 |
Q |
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| T |
30941830 |
acactcgtacaatagtgtatacttttcatacttggaagtgtagttgaagaaatccaaatctaggtttacaatgatatatttcttgggacaagaaacaata |
30941731 |
T |
|
| Q |
138 |
gcatcatcatcataactccataaatccaaccgtgcaatcctcaaaagtcgagatgtttgatttatatcaatgatgtgaaacttttgtgatttgatctcaa |
237 |
Q |
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| T |
30941730 |
gtagcagcatcattactccataaatccaaccgggcaatcctcaaaagtcgagatgtttgatttatatcaatgatgtgaaacttttgtgacttgatctcaa |
30941631 |
T |
|
| Q |
238 |
tagtcaagttgccatgttcacaatcaaggttgaagtttgggtggccacaataacttggttggttgttagcactccaaaatggataactaatattggtgaa |
337 |
Q |
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| T |
30941630 |
tagtcaagttgccatgttcacaatcaaggttgaagtttgggtggccacaataacttggttggttgttaacactccaaaatggataactaacgttggtgaa |
30941531 |
T |
|
| Q |
338 |
gtttccacagataaaaggtgcacaagatttgtagctttc |
376 |
Q |
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| T |
30941530 |
atttccacaactaaaaggtgcacaagatttgaagctttc |
30941492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 38 - 376
Target Start/End: Complemental strand, 30983726 - 30983388
Alignment:
| Q |
38 |
acactcatacaatagggtataattttcataattggaagtgtagttgaagaaatccaaatctaagtttacattgatgtatttctctggacaagaagcaata |
137 |
Q |
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| T |
30983726 |
acactcatataatagcgtatacttctcataattggaagtgtaattgaagaattccgaatctagggttacattgatatatttcttgggacaagaagcaata |
30983627 |
T |
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| Q |
138 |
gcatcatcatcataactccataaatccaaccgtgcaatcctcaaaagtcgagatgtttgatttatatcaatgatgtgaaacttttgtgatttgatctcaa |
237 |
Q |
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| T |
30983626 |
gtagcagaatcataactccataaatccaaccttgcaatcctcaaaacttgtgaagtttgatttatatcaatgatgtgaaacttttgtgacttaatttcaa |
30983527 |
T |
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| Q |
238 |
tagtcaagttgccatgttcacaatcaaggttgaagtttgggtggccacaataacttggttggttgttagcactccaaaatggataactaatattggtgaa |
337 |
Q |
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| T |
30983526 |
tagtcaagttgccatgttcacaatcaagtttgaagtttggatgaccacaataattttgttggttgttaatactccaaaatgggtaactaatattggtgaa |
30983427 |
T |
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| Q |
338 |
gtttccacagataaaaggtgcacaagatttgtagctttc |
376 |
Q |
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| T |
30983426 |
atttccacaactaaaaggtgcacaagatttgaagctttc |
30983388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 38 - 376
Target Start/End: Complemental strand, 30989890 - 30989552
Alignment:
| Q |
38 |
acactcatacaatagggtataattttcataattggaagtgtagttgaagaaatccaaatctaagtttacattgatgtatttctctggacaagaagcaata |
137 |
Q |
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||||||||| ||||| ||||| || ||||||||||||||||| |||||||| ||| |||||| | |||||||||| ||||||| ||||||||||||||| |
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| T |
30989890 |
acactcatataatagcgtatacttctcataattggaagtgtaattgaagaattccgaatctagggttacattgatatatttcttgggacaagaagcaata |
30989791 |
T |
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| Q |
138 |
gcatcatcatcataactccataaatccaaccgtgcaatcctcaaaagtcgagatgtttgatttatatcaatgatgtgaaacttttgtgatttgatctcaa |
237 |
Q |
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| | || ||||||||||||||||||||||| |||||||||||||| | | || ||||||||||||||||||||||||||||||||||| || || |||| |
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| T |
30989790 |
gtagcagaatcataactccataaatccaaccttgcaatcctcaaaacttgtgaagtttgatttatatcaatgatgtgaaacttttgtgacttaatttcaa |
30989691 |
T |
|
| Q |
238 |
tagtcaagttgccatgttcacaatcaaggttgaagtttgggtggccacaataacttggttggttgttagcactccaaaatggataactaatattggtgaa |
337 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| || ||||||||| || ||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
30989690 |
tagtcaagttgccatgttcacaatcaagtttgaagtttggatgaccacaataattttgttggttgttaatactccaaaatgggtaactaatattggtgaa |
30989591 |
T |
|
| Q |
338 |
gtttccacagataaaaggtgcacaagatttgtagctttc |
376 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||||| |
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| T |
30989590 |
atttccacaactaaaaggtgcacaagatttgaagctttc |
30989552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 38 - 376
Target Start/End: Complemental strand, 31009611 - 31009273
Alignment:
| Q |
38 |
acactcatacaatagggtataattttcataattggaagtgtagttgaagaaatccaaatctaagtttacattgatgtatttctctggacaagaagcaata |
137 |
Q |
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||||||||| ||||| ||||| || ||||||||||||||||| |||||||| ||| |||||| | |||||||||| ||||||| ||||||||||||||| |
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| T |
31009611 |
acactcatataatagcgtatacttctcataattggaagtgtaattgaagaattccgaatctagggttacattgatatatttcttgggacaagaagcaata |
31009512 |
T |
|
| Q |
138 |
gcatcatcatcataactccataaatccaaccgtgcaatcctcaaaagtcgagatgtttgatttatatcaatgatgtgaaacttttgtgatttgatctcaa |
237 |
Q |
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| | || ||||||||||||||||||||||| |||||||||||||| | | || ||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
31009511 |
gtagcagaatcataactccataaatccaaccttgcaatcctcaaaacttgtgaagtttgatttatatcaatgatgtgaaacttttgtgacttgatttcaa |
31009412 |
T |
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| Q |
238 |
tagtcaagttgccatgttcacaatcaaggttgaagtttgggtggccacaataacttggttggttgttagcactccaaaatggataactaatattggtgaa |
337 |
Q |
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||||||||||||||||||||||||||| ||||||||| || ||||||||| || | ||||||||| |||||||||||| |||||||| |||||||| |
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| T |
31009411 |
tagtcaagttgccatgttcacaatcaactccgaagtttggatgaccacaataattttgatggttgttaatactccaaaatgggtaactaatgttggtgaa |
31009312 |
T |
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| Q |
338 |
gtttccacagataaaaggtgcacaagatttgtagctttc |
376 |
Q |
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| T |
31009311 |
atctccacatctaaaaggtgcacaagatttgtagctttc |
31009273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 234 - 376
Target Start/End: Complemental strand, 30977091 - 30976949
Alignment:
| Q |
234 |
tcaatagtcaagttgccatgttcacaatcaaggttgaagtttgggtggccacaataacttggttggttgttagcactccaaaatggataactaatattgg |
333 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||| || ||||||||| || ||||||||||| |||||||||||| ||||||||||||| |
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| T |
30977091 |
tcaatagtcaagttgccatgttcacaatcaagtttgaagtttggatgaccacaataattttgttggttgttaatactccaaaatgggtaactaatattgg |
30976992 |
T |
|
| Q |
334 |
tgaagtttccacagataaaaggtgcacaagatttgtagctttc |
376 |
Q |
| |
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|||| |||||||| |||||||||||||||||||| ||||||| |
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| T |
30976991 |
tgaaatttccacaactaaaaggtgcacaagatttgaagctttc |
30976949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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