View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_low_10 (Length: 389)
Name: NF0226_low_10
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_low_10
Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 82 - 379
Target Start/End: Complemental strand, 49997418 - 49997121
Alignment:
Q
82
atggtaaatgggaagaaggttatcttcaagctaaccaagtattgccatcccagtattgaaacaaaagttgtttatgatacttctaagtcaacattttatt
181
Q
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
T
49997418
atggtaaatgggaagaaggttatcttcaagctaatcaagtattgccatcccaatattgaaacaaaagttgtttatgatacttctaagtcaacattttatt
49997319
T
Q
182
gtgtgtgtagacattttgagtcttgtggcattcagtgttcgcatatttttcgtgcaatgatctttgagcatgtggatcatattccaagcagtttggtttt
281
Q
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
T
49997318
gtgtgtgtagacattttgagtctcgtggcattccgtgttcgcatatttttcgtgcaatgatctttgagcatgtggatcatattccaagcaatttggtttt
49997219
T
Q
282
gacacggtggactaagaatgctaagattgctttactgtcatcgaatttgatggatggaatgaactatgatgtagagttcgctcagtttgcagcctatg
379
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
49997218
gacacggtggactaagaatgctaagattgctttactgtcatcgaatttgatggatggaatgaactatgatgtagagttcgctcagtttgcagcctatg
49997121
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 24803406 - 24803526
Alignment:
Q
82
atggtaaatgggaagaaggttatcttcaagctaaccaagtattgccatcccagtattgaaacaaaagttgtttatgatacttctaagtcaacattttatt
181
Q
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
T
24803406
atggtaaatgggaagaaggttatcttcaagctaaccaagtattgtcatcccaatattgaaacaaaagttgtttatgatacttctaagtcaacattttat-
24803504
T
Q
182
gtgtgtgtagacattttgagtct
204
Q
||||||||||||||||||||||
T
24803505
-tgtgtgtagacattttgagtct
24803526
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 82 - 185
Target Start/End: Complemental strand, 52658364 - 52658261
Alignment:
Q
82
atggtaaatgggaagaaggttatcttcaagctaaccaagtattgccatcccagtattgaaacaaaagttgtttatgatacttctaagtcaacattttatt
181
Q
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
T
52658364
atggtaaatgggtagaaggttatcttcaagctaaccaagtattgccatcccaatattgaaacaaaagttgtttatgatacttctaagtcaacattttatt
52658265
T
Q
182
gtgt
185
Q
||||
T
52658264
gtgt
52658261
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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