View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_low_12 (Length: 346)
Name: NF0226_low_12
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_low_12
Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 73 - 264
Target Start/End: Original strand, 24216017 - 24216208
Alignment:
Q
73
gaaaacgaggcagaagttgttgatgcagagttggagagtggcggctgagtttgattgtctctgttcgatgtggaggccgatgatgggggaagggaaggag
172
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||
T
24216017
gaaaacgaggcagaagttgttgatgcagagttggagagtggcggctgagtttgattgactccgtttgatgtggaggccgatgatgggggaagggaaggag
24216116
T
Q
173
aggattagattttcgataaaccaggcatccacgtggtcaggagaagaagtgaggagggtttggattttttggtttgaatcgatgatgatgtc
264
Q
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
T
24216117
aggattaagttttcgataaaccaggcatccacgtggtcaggagaagaagtgaggagggtttggatttttcggtttgaatcgatggtgatgtc
24216208
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 75 - 264
Target Start/End: Original strand, 24210262 - 24210451
Alignment:
Q
75
aaacgaggcagaagttgttgatgcagagttggagagtggcggctgagtttgattgtctctgttcgatgtggaggccgatgatgggggaagggaaggagag
174
Q
||||||||||||||||||| |||||||| ||||||||| |||||||||||| | ||| |||| |||||||||||||||||||| |||| |||||| ||
T
24210262
aaacgaggcagaagttgttaatgcagagggtgagagtggctgctgagtttgatggactccgttcaatgtggaggccgatgatgggagaagagaaggaaag
24210361
T
Q
175
gattagattttcgataaaccaggcatccacgtggtcaggagaagaagtgaggagggtttggattttttggtttgaatcgatgatgatgtc
264
Q
|||| ||| |||||||||| | |||||| ||||||||| || |||||||||||||||||| | | |||||| |||||| |||||||
T
24210362
gattctgtttacgataaaccaatcgtccacgaggtcaggagtggaggtgaggagggtttggattgtgtagtttgagtcgatggtgatgtc
24210451
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 140 - 264
Target Start/End: Original strand, 24217435 - 24217559
Alignment:
Q
140
atgtggaggccgatgatgggggaagggaaggagaggattagattttcgataaaccaggcatccacgtggtcaggagaagaagtgaggagggtttggattt
239
Q
|||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||||| || ||||||||||||| |||||||||||
T
24217435
atgtggaggccgatgatgggggaagggacagggaggattaggttttcgataaaccaggcttccacgtggttagaggaagaagtgaggacggtttggattt
24217534
T
Q
240
tttggtttgaatcgatgatgatgtc
264
Q
| |||||||||| ||| |||||||
T
24217535
tgcggtttgaatcaatggtgatgtc
24217559
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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