View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_low_13 (Length: 334)
Name: NF0226_low_13
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_low_13
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 14696525 - 14696298
Alignment:
Q
19
taggcatatttgggagacgttctccattcggtttgaatgggtcccgaagtgctatgaacaccctcctatggggagagatgtgttaggagtaattgaacga
118
Q
||||||| |||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
T
14696525
taggcatgtttgggagacgttctccattcgatttgaatggggcccgaagtgctattaacaccctcctgcggggagagatgtgttaggagtaattgaacga
14696426
T
Q
119
aatgcggaattggccttgttttggtttgggcctatgtaaatgagccttaatctactgctcggtcaagaacaaattccatctcaaattaggagacacttag
218
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
T
14696425
aatgcggaattggccttgttttggtttgggcctatgtaaatgagccttaatctactgctcggtccagaacaaattccatctcaaattaggagacacttag
14696326
T
Q
219
gtgtcatgaagtttatagagtcatacat
246
Q
||||||||||||||||||||||||||||
T
14696325
gtgtcatgaagtttatagagtcatacat
14696298
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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