View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0226_low_14 (Length: 326)
Name: NF0226_low_14
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0226_low_14 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 94 - 326
Target Start/End: Original strand, 36884349 - 36884581
Alignment:
| Q |
94 |
cattaatttgaaaccaaaacatgatacaaagaaaatttcagttttgaaaaatagattaagattatactttgccctcaggaaatacagctttgtaaacggg |
193 |
Q |
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| T |
36884349 |
cattaatttgaaaccaaaacacgatacaaagaaaatttcagttttgaaaaatagattaagattatactttgccctcaggaaatacagctttgtaaacggg |
36884448 |
T |
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| Q |
194 |
accaagagatccctctcccagaaggttgccttcattaaagaagttagtagccagctgaagctctgctatggtataaattttcgtccttccagtggatctg |
293 |
Q |
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| T |
36884449 |
accaagagatccctctcccagaaggttgccttcattaaagaagttagtagccagctgaagctctgctatggtataaattttcgtccttccagtggatctg |
36884548 |
T |
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| Q |
294 |
cctcttttggaaaaacttcttcttgatgtttcc |
326 |
Q |
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| T |
36884549 |
cctcttttggaaaaacttcttcttgatgtttcc |
36884581 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 318
Target Start/End: Original strand, 22554762 - 22554902
Alignment:
| Q |
178 |
cagctttgtaaacgggaccaagagatccctctcccagaaggttgccttcattaaagaagttagtagccagctgaagctctgctatggtataaattttcgt |
277 |
Q |
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||||| ||||||| || |||||||| || |||||||||||||| ||||| | || ||||||| ||| ||||| ||| |||| || |||| ||||| |
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| T |
22554762 |
cagctctgtaaacagggccaagagagcctactcccagaaggttgtcttcactgaaattgttagtaaccaactgaacctcagctactgtgtaaaccttcgt |
22554861 |
T |
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| Q |
278 |
ccttccagtggatctgcctcttttggaaaaacttcttcttg |
318 |
Q |
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| T |
22554862 |
ccttctggtgtatttgtctctttcagaaaaacttcttcttg |
22554902 |
T |
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