View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_low_15 (Length: 322)
Name: NF0226_low_15
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_low_15
[» ] scaffold0002 (2 HSPs)
Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 13660651 - 13660334
Alignment:
Q
1
cttgtccaactatgtataaatcataaccaaatttgtctaaatcattgaggattgtgggaatatcttcacttgaatggacatcaacctcggaatatgatat
100
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
T
13660651
cttgtccaactatgtataaatcataaccaaatttgtctaaatcattgaggattgtgggaatatcttcacttgaatggacatcaacctccgaatatgatat
13660552
T
Q
101
agaatcattgttattcacggctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacagataatacacct
200
Q
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
T
13660551
agaatcattgttattcactgctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacagataatatgcct
13660452
T
Q
201
tgtacttcataatgacttataatatttacttcggctgcttcgtcaaacaagagcatccgaaccaatgataatcgggttcctgggtgccccaccatcctcc
300
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
13660451
tgtacttcataatgacttataatatttacttcggctgcttcgtcaaacaagagcatccgaaccaatgataatcgggttcctgggtgccccaccatcctcc
13660352
T
Q
301
atgcaacagctagggctt
318
Q
|||||||||||| |||||
T
13660351
atgcaacagctaaggctt
13660334
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 13653151 - 13652834
Alignment:
Q
1
cttgtccaactatgtataaatcataaccaaatttgtctaaatcattgaggattgtgggaatatcttcacttgaatggacatcaacctcggaatatgatat
100
Q
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||| |||||
T
13653151
cttgtccaactatgtataaatcacaaccaaatttgtctaaatcatcaaggattgtgggaatatcttcacctgaatggacatcaacctctgaataggatat
13653052
T
Q
101
agaatcattgttattcacggctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacagataatacacct
200
Q
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
T
13653051
aaaatcattgttattcactgctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacagataatactcct
13652952
T
Q
201
tgtacttcataatgacttataatatttacttcggctgcttcgtcaaacaagagcatccgaaccaatgataatcgggttcctgggtgccccaccatcctcc
300
Q
||| ||||| ||||||| || | | |||||| || ||| | || |||| |||||| ||||||| ||||||||| |||| ||||||| || |||||||||
T
13652951
tgtgtttcattatgacttttagtgtctacttcagcagctacatctaacaggagcattcgaaccactgataatcgagttcttgggtgctccgccatcctcc
13652852
T
Q
301
atgcaacagctagggctt
318
Q
||||||||| || |||||
T
13652851
atgcaacagttaaggctt
13652834
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 28609278 - 28609086
Alignment:
Q
3
tgtccaactatgtataaatcataaccaaatttgtctaaatcattgaggattgtgggaatatcttcacttgaatggacatcaacctcggaatatgatatag
102
Q
|||||||||||||||||||| |||||| ||| |||| ||||||||| |||||||||||||||| |||||||||||||| || ||||| |||||||
T
28609278
tgtccaactatgtataaatcgcaaccaattttttctatctcattgagggatgtgggaatatcttcagcagaatggacatcaacttctgaataagatatag
28609179
T
Q
103
aatcattgttattcacggctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacagataata
195
Q
|||||||||| |||| | | ||| ||||||| ||| ||||| || || |||| ||||| ||||||||| |||||||||||| ||||||||
T
28609178
aatcattgttgttcatcgttgtcaatctaaatccattaacatactcatcatctaattccttttgcttctcactatccattacaatagataata
28609086
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 437624 - 437815
Alignment:
Q
1
cttgtccaactatgtataaatcataaccaaatttgtctaaatcattgaggattgtgggaatatcttcacttgaatggacatcaacctcggaatatgatat
100
Q
||||||||||||| ||||||| || ||| || |||| ||||||||| |||||||||||||||||| ||||||||||| ||| || ||||| |||||
T
437624
cttgtccaactatatataaattgcaataaaaattttctagttcattgagggttgtgggaatatcttcacctgaatggacattaacttctgaataagatat
437723
T
Q
101
agaatcattgttattcacggctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacagata
192
Q
|||||||||||| |||| ||| ||| ||||||| ||| ||||| || || |||| ||||||||||||||| |||||||||||| |||||
T
437724
agaatcattgttgttcatcgctgtcaatctaaatccattcacatactcatcatctaactccttctgcttctcactatccattacaatagata
437815
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 318
Target Start/End: Original strand, 437866 - 437941
Alignment:
Q
243
tcaaacaagagcatccgaaccaatgataatcgggttcctgggtgccccaccatcctccatgcaacagctagggctt
318
Q
||||||| |||||||||||||| ||||||| |||||||| | | || |||| |||||||||||||||| |||||
T
437866
tcaaacaggagcatccgaaccactgataattgggttcctatgcgtcctgccattctccatgcaacagctaaggctt
437941
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
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