View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0226_low_15 (Length: 322)
Name: NF0226_low_15
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0226_low_15 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 13660651 - 13660334
Alignment:
| Q |
1 |
cttgtccaactatgtataaatcataaccaaatttgtctaaatcattgaggattgtgggaatatcttcacttgaatggacatcaacctcggaatatgatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13660651 |
cttgtccaactatgtataaatcataaccaaatttgtctaaatcattgaggattgtgggaatatcttcacttgaatggacatcaacctccgaatatgatat |
13660552 |
T |
|
| Q |
101 |
agaatcattgttattcacggctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacagataatacacct |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13660551 |
agaatcattgttattcactgctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacagataatatgcct |
13660452 |
T |
|
| Q |
201 |
tgtacttcataatgacttataatatttacttcggctgcttcgtcaaacaagagcatccgaaccaatgataatcgggttcctgggtgccccaccatcctcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13660451 |
tgtacttcataatgacttataatatttacttcggctgcttcgtcaaacaagagcatccgaaccaatgataatcgggttcctgggtgccccaccatcctcc |
13660352 |
T |
|
| Q |
301 |
atgcaacagctagggctt |
318 |
Q |
| |
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|||||||||||| ||||| |
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| T |
13660351 |
atgcaacagctaaggctt |
13660334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 13653151 - 13652834
Alignment:
| Q |
1 |
cttgtccaactatgtataaatcataaccaaatttgtctaaatcattgaggattgtgggaatatcttcacttgaatggacatcaacctcggaatatgatat |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||| ||||| |
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| T |
13653151 |
cttgtccaactatgtataaatcacaaccaaatttgtctaaatcatcaaggattgtgggaatatcttcacctgaatggacatcaacctctgaataggatat |
13653052 |
T |
|
| Q |
101 |
agaatcattgttattcacggctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacagataatacacct |
200 |
Q |
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| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13653051 |
aaaatcattgttattcactgctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacagataatactcct |
13652952 |
T |
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| Q |
201 |
tgtacttcataatgacttataatatttacttcggctgcttcgtcaaacaagagcatccgaaccaatgataatcgggttcctgggtgccccaccatcctcc |
300 |
Q |
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||| ||||| ||||||| || | | |||||| || ||| | || |||| |||||| ||||||| ||||||||| |||| ||||||| || ||||||||| |
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| T |
13652951 |
tgtgtttcattatgacttttagtgtctacttcagcagctacatctaacaggagcattcgaaccactgataatcgagttcttgggtgctccgccatcctcc |
13652852 |
T |
|
| Q |
301 |
atgcaacagctagggctt |
318 |
Q |
| |
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||||||||| || ||||| |
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| T |
13652851 |
atgcaacagttaaggctt |
13652834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 28609278 - 28609086
Alignment:
| Q |
3 |
tgtccaactatgtataaatcataaccaaatttgtctaaatcattgaggattgtgggaatatcttcacttgaatggacatcaacctcggaatatgatatag |
102 |
Q |
| |
|
|||||||||||||||||||| |||||| ||| |||| ||||||||| |||||||||||||||| |||||||||||||| || ||||| ||||||| |
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| T |
28609278 |
tgtccaactatgtataaatcgcaaccaattttttctatctcattgagggatgtgggaatatcttcagcagaatggacatcaacttctgaataagatatag |
28609179 |
T |
|
| Q |
103 |
aatcattgttattcacggctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacagataata |
195 |
Q |
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|||||||||| |||| | | ||| ||||||| ||| ||||| || || |||| ||||| ||||||||| |||||||||||| |||||||| |
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| T |
28609178 |
aatcattgttgttcatcgttgtcaatctaaatccattaacatactcatcatctaattccttttgcttctcactatccattacaatagataata |
28609086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 437624 - 437815
Alignment:
| Q |
1 |
cttgtccaactatgtataaatcataaccaaatttgtctaaatcattgaggattgtgggaatatcttcacttgaatggacatcaacctcggaatatgatat |
100 |
Q |
| |
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||||||||||||| ||||||| || ||| || |||| ||||||||| |||||||||||||||||| ||||||||||| ||| || ||||| ||||| |
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| T |
437624 |
cttgtccaactatatataaattgcaataaaaattttctagttcattgagggttgtgggaatatcttcacctgaatggacattaacttctgaataagatat |
437723 |
T |
|
| Q |
101 |
agaatcattgttattcacggctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacagata |
192 |
Q |
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|||||||||||| |||| ||| ||| ||||||| ||| ||||| || || |||| ||||||||||||||| |||||||||||| ||||| |
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| T |
437724 |
agaatcattgttgttcatcgctgtcaatctaaatccattcacatactcatcatctaactccttctgcttctcactatccattacaatagata |
437815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 318
Target Start/End: Original strand, 437866 - 437941
Alignment:
| Q |
243 |
tcaaacaagagcatccgaaccaatgataatcgggttcctgggtgccccaccatcctccatgcaacagctagggctt |
318 |
Q |
| |
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||||||| |||||||||||||| ||||||| |||||||| | | || |||| |||||||||||||||| ||||| |
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| T |
437866 |
tcaaacaggagcatccgaaccactgataattgggttcctatgcgtcctgccattctccatgcaacagctaaggctt |
437941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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