View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0226_low_19 (Length: 317)
Name: NF0226_low_19
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0226_low_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 131 - 317
Target Start/End: Original strand, 52890624 - 52890810
Alignment:
| Q |
131 |
ctgctaaagcctcatcctgatccgctctcccaaacgtcgcgtcatccattgtcccctcctttgccgcatgtcacatacccattagatcatttgaaaaact |
230 |
Q |
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| T |
52890624 |
ctgctaaagcctcatcctgatccgctctcccaaacgtcacgtcatccattgtcccctcctttgccacatgtcatatacccattagatcatttgaaaaact |
52890723 |
T |
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| Q |
231 |
ttcccccagtggggtcactatattctgacattctccaaaagcttcaccttgtatatccttttgtctcttcaacattaactccacttc |
317 |
Q |
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| T |
52890724 |
ttcccccagtggggtcactatattctgacattctccaaaagcttcaccttgtatatccttttgtctcttcaacattaactccacttc |
52890810 |
T |
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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 6486359 - 6486275
Alignment:
| Q |
30 |
aatcaaacaacaaattcaccattctcaaagccacaatggccacaacatgaagacacacctccacagaattcactaatcggttcac |
114 |
Q |
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| T |
6486359 |
aatcaaacaacaaattcaccattctcaaagccacaatggtcacaacatgaagacacgcctccacagaattcactaattggttcac |
6486275 |
T |
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