View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_low_19 (Length: 317)
Name: NF0226_low_19
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_low_19
[» ] chr3 (1 HSPs)
Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 131 - 317
Target Start/End: Original strand, 52890624 - 52890810
Alignment:
Q
131
ctgctaaagcctcatcctgatccgctctcccaaacgtcgcgtcatccattgtcccctcctttgccgcatgtcacatacccattagatcatttgaaaaact
230
Q
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
T
52890624
ctgctaaagcctcatcctgatccgctctcccaaacgtcacgtcatccattgtcccctcctttgccacatgtcatatacccattagatcatttgaaaaact
52890723
T
Q
231
ttcccccagtggggtcactatattctgacattctccaaaagcttcaccttgtatatccttttgtctcttcaacattaactccacttc
317
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
52890724
ttcccccagtggggtcactatattctgacattctccaaaagcttcaccttgtatatccttttgtctcttcaacattaactccacttc
52890810
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 6486359 - 6486275
Alignment:
Q
30
aatcaaacaacaaattcaccattctcaaagccacaatggccacaacatgaagacacacctccacagaattcactaatcggttcac
114
Q
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||
T
6486359
aatcaaacaacaaattcaccattctcaaagccacaatggtcacaacatgaagacacgcctccacagaattcactaattggttcac
6486275
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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