View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_low_20 (Length: 316)
Name: NF0226_low_20
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_low_20
Alignment Details
Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 90 - 205
Target Start/End: Complemental strand, 54238564 - 54238453
Alignment:
Q
90
ttacaggcacgaaaactttctcaccagtaatattatgttcttcatcaaatccaaccttcctattatttccttccttcccttcaaactcaattttctccaa
189
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
T
54238564
ttacaggcacgaaaactttctcaccagtaatattatgttcttcatcaaatccaaccttcctattatttcc----ttcccttcaaactcaattttctccaa
54238469
T
Q
190
gaatcttgcatttgtg
205
Q
||||||||||||||||
T
54238468
gaatcttgcatttgtg
54238453
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 54238632 - 54238589
Alignment:
Q
25
atactgtggcggaataataaattatgtgtgaatgctatataatc
68
Q
||||||||||||||||||||||||||||||||||||||||||||
T
54238632
atactgtggcggaataataaattatgtgtgaatgctatataatc
54238589
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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