View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_low_22 (Length: 311)
Name: NF0226_low_22
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_low_22
Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 84 - 214
Target Start/End: Complemental strand, 6635831 - 6635701
Alignment:
Q
84
gagccagaagaagacaccgaacatgacactgacacatatatctgctccgaggaagcagtccatgtggcaatgacattagacacgacatatatccgaggat
183
Q
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
T
6635831
gagccagaagaagacaccgaacatgacactggcacatatatctgctccgaggaagcagtccatgtggcaatgacattagacacaacatatatccgaggat
6635732
T
Q
184
ccatggctgcaatcctctctgtcctccaaca
214
Q
|||||||||||||||||||||||||||||||
T
6635731
ccatggctgcaatcctctctgtcctccaaca
6635701
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 52164667 - 52164592
Alignment:
Q
140
agtccatgtggcaatgacattagacacgacatatatccgaggatccatggctgcaatcctctctgtcctccaacat
215
Q
|||||| || ||||||||| | ||||| ||||||||||||||||||||||| |||||| | || |||||||||||
T
52164667
agtccaagtagcaatgacactcgacacaacatatatccgaggatccatggcagcaatcttatcaatcctccaacat
52164592
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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