View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0226_low_22 (Length: 311)
Name: NF0226_low_22
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0226_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 84 - 214
Target Start/End: Complemental strand, 6635831 - 6635701
Alignment:
| Q |
84 |
gagccagaagaagacaccgaacatgacactgacacatatatctgctccgaggaagcagtccatgtggcaatgacattagacacgacatatatccgaggat |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6635831 |
gagccagaagaagacaccgaacatgacactggcacatatatctgctccgaggaagcagtccatgtggcaatgacattagacacaacatatatccgaggat |
6635732 |
T |
|
| Q |
184 |
ccatggctgcaatcctctctgtcctccaaca |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
6635731 |
ccatggctgcaatcctctctgtcctccaaca |
6635701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 52164667 - 52164592
Alignment:
| Q |
140 |
agtccatgtggcaatgacattagacacgacatatatccgaggatccatggctgcaatcctctctgtcctccaacat |
215 |
Q |
| |
|
|||||| || ||||||||| | ||||| ||||||||||||||||||||||| |||||| | || ||||||||||| |
|
|
| T |
52164667 |
agtccaagtagcaatgacactcgacacaacatatatccgaggatccatggcagcaatcttatcaatcctccaacat |
52164592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University