View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0226_low_23 (Length: 310)

Name: NF0226_low_23

Description: NF0226

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF0226_low_23

[»] chr2 (1 HSPs)

Alignment Details

Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 169; E-Value: 1e-90

Query Start/End: Original strand, 62 - 234

Target Start/End: Original strand, 44636064 - 44636236

Alignment:

Q	62	agacaaaaagttgcaagttttgcataaaaatatggggaaaaccccgtctatttgcagcagtaatctgattatttgtttgctccaatccatatatacggta	161	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	44636064	agacaaaaagttgcaagttttgcataaaaatatggggaaaaccccgtctatttgtagcagtaatctgattatttgtttgctccaatccatatatacggta	44636163	T

Q	162	ataagatggagtatcatttcatgtgcatagcaaagtataactataacgtgatggatctcatgcaaaatagtta	234	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	44636164	ataagatggagtatcatttcatgtgcatagcaaagtataactataacgtgatggatctcatgcaaaatagtta	44636236	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

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