View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_low_26 (Length: 307)
Name: NF0226_low_26
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_low_26
[» ] chr8 (2 HSPs)
Alignment Details
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 204 - 307
Target Start/End: Complemental strand, 26890989 - 26890879
Alignment:
Q
204
agatcaaattaggtaacaattttannnnnnnggtgaaggtgtg-----tacaaacaagtgaagtgaaaatgaagcagttgac--aaaaacgaaatgagtg
296
Q
|||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||
T
26890989
agatcaaattaggtaacaattttatttttttggtgaaggtgtgtataatacaaacaagtgatgtgaaaatgaagcagttgacagaaaaacgaaatgagtg
26890890
T
Q
297
acttaccttac
307
Q
|||||||||||
T
26890889
acttaccttac
26890879
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 26891040 - 26890996
Alignment:
Q
74
catgcaaaattgttgtggtgctctaaggttctcatcatatttttc
118
Q
|||||||||||||||||||||||||||||||||||||||||||||
T
26891040
catgcaaaattgttgtggtgctctaaggttctcatcatatttttc
26890996
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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