View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_low_27 (Length: 302)
Name: NF0226_low_27
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_low_27
Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 78 - 221
Target Start/End: Complemental strand, 4355515 - 4355378
Alignment:
Q
78
tgtatagggtaagtatgcctattttggtacttgcccattaatttgtgtcatcccgagtaagcatggaaattttcttccttggcaatggcaaccaacttaa
177
Q
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
T
4355515
tgtatagggtaagtatgcctattttgttacttgcccattaatttgtgtcatcccgtgtaagcatggaaattttcttccttg------gcaaccaacttaa
4355422
T
Q
178
ttaagcaggagaaaagtgatatctttataaaagtcattgaatga
221
Q
||||||||||||||||||||||||||||||||||||||||||||
T
4355421
ttaagcaggagaaaagtgatatctttataaaagtcattgaatga
4355378
T
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