View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_low_28 (Length: 299)
Name: NF0226_low_28
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_low_28
Alignment Details
Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 60 - 289
Target Start/End: Original strand, 3711104 - 3711331
Alignment:
Q
60
tatctacaactatctgaaaagacaattgttcaagattggattttggggtccattaaaccataatccacccactctaaagactaactagcaacattttcca
159
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
T
3711104
tatctacaactatctgaaaagacaattgttcaagattggattttggggtccattaaaccataatccacccactctaaagactaactagcaacattttcta
3711203
T
Q
160
aggaacacactttctaacctnnnnnnncctctcgcttacacacttactgacttgaatatatgagtgtttgtaggtaca-ccccacctctagggctgatga
258
Q
||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||
T
3711204
aggtacacactttctaacctaaaaaaacctctcgcctacacacttactgacttgaatatatgagtgtttgtaggtacacccccacctcaagggc---tga
3711300
T
Q
259
tgacgtgggtatgtccaaccattaccctatg
289
Q
|||||||||||| |||||||| |||| ||||
T
3711301
tgacgtgggtatatccaaccactaccatatg
3711331
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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