View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_low_29 (Length: 299)
Name: NF0226_low_29
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_low_29
Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 53 - 230
Target Start/End: Complemental strand, 18464648 - 18464471
Alignment:
Q
53
agcagagattcggcgtgtcctggagattgcatctgctgctaaagttgaggctgcaaattacttcctgatgatgttggatgcttctgctgcaggaggtctt
152
Q
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
T
18464648
agcagagattcggcgggtcctagagattgcatctgctgctaaagttgaggctgcaaattacttcctgatgatgttggatgcttctgatgtaggaggtctt
18464549
T
Q
153
gagattgaaagagcaatctctactttcaccaggttttttagggctcagaagcttggagaacttcgactgtgcatggtg
230
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
18464548
gagattgaaagagcaatctctactttcaccaggttttttagggctcagaagcttggagaacttcgactgtgcatggtg
18464471
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 16190043 - 16189971
Alignment:
Q
76
agattgcatctgctgctaaagttgaggctgcaaattacttcctgatgatgttggatgcttctgctgcaggagg
148
Q
||||||||| |||||||||| || |||||| |||||||| ||||| || | ||||||||||||| ||||||
T
16190043
agattgcatatgctgctaaaaccgaagctgcagattacttcttgatgttgctagatgcttctgctgaaggagg
16189971
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 206
Target Start/End: Complemental strand, 16601787 - 16601659
Alignment:
Q
78
attgcatctgctgctaaagttgaggctgcaaattacttcctgatgatgttggatgcttctgctgcaggaggtcttgagattgaaagagcaatctctactt
177
Q
||||||||||||||| |||||| |||||||||| ||| ||||||||||||||| ||| ||| || | ||| || |||||||||| | ||||| |
T
16601787
attgcatctgctgctggtgttgagtctgcaaattatttcttgatgatgttggatgtttcggctacaagtggttttctagttgaaagagctgtttctacct
16601688
T
Q
178
tcaccaggttttttagggctcagaagctt
206
Q
|||| || ||||||||| |||| ||||||
T
16601687
tcacaagattttttaggactcaaaagctt
16601659
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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