View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_low_3 (Length: 480)
Name: NF0226_low_3
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_low_3
Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 29 - 472
Target Start/End: Complemental strand, 44375642 - 44375183
Alignment:
Q
29
aaaaactacctattttttgaattaggtcaatcaatttggtcttaannnnnnnnnacaagcaatttggtcttaatattagctcgtatctaatttactctta
128
Q
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
T
44375642
aaaaactaccttttttttgaattaggtcaatcaatttggtcttaatttttttttacaagcaatttggtcttaatattagctcgtatctaatttactgtta
44375543
T
Q
129
aattaattcat--------aaattaggccctaaattacatcgcttagcaaattacataactcaactcttcatactacatttcttcnnnnnnnnnnnnnn-
219
Q
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
44375542
aattatttcatttactgataaattaggccctaaattacatcgcttagcaaattacataactcaactcttcatactacatttcttcttcttcttcaaaaaa
44375443
T
Q
220
-------ctcttcctactacattgcgtcnnnnnnngacttcctactatacatattttgatacactacactcgcagaaactaatcatgaacacacatgaac
312
Q
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
T
44375442
aaaaaaactcttcctactacattgcgtcaaaaaaagacttcctactatacatattttgatgcactacactcgcagaaactaatcatgaacacacatgaac
44375343
T
Q
313
acgtagcgacgcttaataaacaaagaacatagatgaacacattaaagtggaagaaatcacaaaagctcaaccatttatgtacatgtacaatgtactaagt
412
Q
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
T
44375342
acgtagcgacgcttaataaacaaagaacatagatgaacacattaaagtggtagaaatcacaaaagctcaaccatttatgtacatgtacaatgtactaagt
44375243
T
Q
413
gagagagatattgtgcattcagtcattcacattaaggtcactaccatctatgcctatgct
472
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
44375242
gagagagatattgtgcattcagtcattcacattaaggtcactaccatctatgcctatgct
44375183
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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