View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0226_low_3 (Length: 480)
Name: NF0226_low_3
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0226_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 29 - 472
Target Start/End: Complemental strand, 44375642 - 44375183
Alignment:
| Q |
29 |
aaaaactacctattttttgaattaggtcaatcaatttggtcttaannnnnnnnnacaagcaatttggtcttaatattagctcgtatctaatttactctta |
128 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44375642 |
aaaaactaccttttttttgaattaggtcaatcaatttggtcttaatttttttttacaagcaatttggtcttaatattagctcgtatctaatttactgtta |
44375543 |
T |
|
| Q |
129 |
aattaattcat--------aaattaggccctaaattacatcgcttagcaaattacataactcaactcttcatactacatttcttcnnnnnnnnnnnnnn- |
219 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44375542 |
aattatttcatttactgataaattaggccctaaattacatcgcttagcaaattacataactcaactcttcatactacatttcttcttcttcttcaaaaaa |
44375443 |
T |
|
| Q |
220 |
-------ctcttcctactacattgcgtcnnnnnnngacttcctactatacatattttgatacactacactcgcagaaactaatcatgaacacacatgaac |
312 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44375442 |
aaaaaaactcttcctactacattgcgtcaaaaaaagacttcctactatacatattttgatgcactacactcgcagaaactaatcatgaacacacatgaac |
44375343 |
T |
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| Q |
313 |
acgtagcgacgcttaataaacaaagaacatagatgaacacattaaagtggaagaaatcacaaaagctcaaccatttatgtacatgtacaatgtactaagt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44375342 |
acgtagcgacgcttaataaacaaagaacatagatgaacacattaaagtggtagaaatcacaaaagctcaaccatttatgtacatgtacaatgtactaagt |
44375243 |
T |
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| Q |
413 |
gagagagatattgtgcattcagtcattcacattaaggtcactaccatctatgcctatgct |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44375242 |
gagagagatattgtgcattcagtcattcacattaaggtcactaccatctatgcctatgct |
44375183 |
T |
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