View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_low_31 (Length: 296)
Name: NF0226_low_31
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_low_31
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 31 - 277
Target Start/End: Complemental strand, 53120604 - 53120358
Alignment:
Q
31
tgatatccacatgtatttcgttaaataaaatagagttttaaaaagataatgttactagcattccgttttatatagccaccattaagatccacttaggata
130
Q
|||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
T
53120604
tgatatccacatagatttcgctcaataaaatagagttttaaaaagataatgttactagcattccgttttatctagccaccattaagatccacttaggata
53120505
T
Q
131
aaatttgttctcatataaaaccttttctttgtaataaatctaatactacaagttaattaccacttaatactaattatcccaatagaagtaaactgttatt
230
Q
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
T
53120504
aaatttgttctcatgtaaaaccttttctttgtaataaatctaatactacaagttaattaccacttaatactaattatcccaataaaagtaaactcttatt
53120405
T
Q
231
atgaacaaactttacttattatatatcgggcatttcataactcctta
277
Q
|||||||||||||||||||||||||||||||||||||| ||||||||
T
53120404
atgaacaaactttacttattatatatcgggcatttcattactcctta
53120358
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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