View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0226_low_32 (Length: 288)

Name: NF0226_low_32
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0226_low_32
NF0226_low_32
[»] chr2 (10 HSPs)
chr2 (30-181)||(6915171-6915322)
chr2 (41-97)||(10492777-10492833)
chr2 (40-92)||(28105350-28105402)
chr2 (34-97)||(10463585-10463648)
chr2 (34-81)||(10507349-10507396)
chr2 (46-97)||(10860707-10860758)
chr2 (35-97)||(10474161-10474223)
chr2 (41-97)||(7476566-7476622)
chr2 (46-97)||(10848803-10848854)
chr2 (40-97)||(7478731-7478788)
[»] chr4 (5 HSPs)
chr4 (189-288)||(3762512-3762611)
chr4 (195-288)||(3745722-3745815)
chr4 (195-288)||(3776599-3776692)
chr4 (195-288)||(3780912-3781005)
chr4 (195-288)||(3751539-3751632)
[»] chr7 (2 HSPs)
chr7 (30-101)||(15045570-15045641)
chr7 (128-181)||(15047553-15047606)
[»] chr8 (1 HSPs)
chr8 (45-96)||(44307022-44307073)


Alignment Details
Target: chr2 (Bit Score: 144; Significance: 9e-76; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 30 - 181
Target Start/End: Complemental strand, 6915322 - 6915171
Alignment:
Q  30 tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcagctgaaatgttctcatc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915322 tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcagctgaaatgttctcatc 6915223  T
Q  130 atcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct 181  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6915222 atcactaagaaacgcttcagcaagtacatcatctacctctgacacagtttct 6915171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 10492777 - 10492833
Alignment:
Q  41 gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 97  Q
    |||||||||||||| ||||||| ||||||  |||||||||| |||||||||||||||    
T  10492777 gcactacccatgaaaaccggtacaaatttatgtgctatggttgccctacgaattgct 10492833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 28105402 - 28105350
Alignment:
Q  40 agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaa 92  Q
    |||| ||||||||||||| |||||||| |||||||||||||| ||||||||||    
T  28105402 agcattacccatgaatactggtataaacttccgtgctatggtggccctacgaa 28105350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 10463585 - 10463648
Alignment:
Q  34 tttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 97  Q
    ||||| ||||||||||||||| |  |||||||||||||||||||| || || ||||||||||||    
T  10463585 tttgaaagcactacccatgaaaaatggtataaatttccgtgctatcgtggctctacgaattgct 10463648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 10507349 - 10507396
Alignment:
Q  34 tttgacagcactacccatgaataccggtataaatttccgtgctatggt 81  Q
    ||||| |||||| ||||||||||| |||||||||||||||||||||||    
T  10507349 tttgaaagcactgcccatgaatacgggtataaatttccgtgctatggt 10507396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 10860707 - 10860758
Alignment:
Q  46 acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 97  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||| ||||    
T  10860707 acccatgaatactggtataaatttccgtgctatggtgaccctacgaactgct 10860758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 10474161 - 10474223
Alignment:
Q  35 ttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 97  Q
    |||| |||||| ||||||||||  |||||||| |||||||||||||| |||||||||| ||||    
T  10474161 ttgaaagcactgcccatgaatattggtataaacttccgtgctatggtggccctacgaactgct 10474223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 7476622 - 7476566
Alignment:
Q  41 gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 97  Q
    |||||||||||||| ||||||| ||||||| ||||||| || |||||| ||||||||    
T  7476622 gcactacccatgaaaaccggtacaaatttctgtgctatagttgccctatgaattgct 7476566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 10848803 - 10848854
Alignment:
Q  46 acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 97  Q
    |||||||||||| |||||||||||  |||||||||| |||||||||| ||||    
T  10848803 acccatgaatactggtataaatttgtgtgctatggtggccctacgaactgct 10848854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 7478788 - 7478731
Alignment:
Q  40 agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 97  Q
    |||||| |||||||| |||||||||||||| |||||| |||| |||||| ||| ||||    
T  7478788 agcactgcccatgaagaccggtataaatttgcgtgctctggttgccctaagaactgct 7478731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 189 - 288
Target Start/End: Original strand, 3762512 - 3762611
Alignment:
Q  189 cactgacaccaacaacaggcatctccctaaccttattcagagctggattcctccccaagatagtaatagtacttcctttatactttccttcaatcaaagc 288  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||    
T  3762512 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatactttccttcaatgaaagc 3762611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 195 - 288
Target Start/End: Original strand, 3745722 - 3745815
Alignment:
Q  195 caccaacaacaggcatctccctaaccttattcagagctggattcctccccaagatagtaatagtacttcctttatactttccttcaatcaaagc 288  Q
    ||||||||| |||||| |||||||||||||| ||||| | ||| ||||||||||||||||||||||| || ||||||||||||||||| |||||    
T  3745722 caccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagtactcccattatactttccttcaatgaaagc 3745815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 195 - 288
Target Start/End: Original strand, 3776599 - 3776692
Alignment:
Q  195 caccaacaacaggcatctccctaaccttattcagagctggattcctccccaagatagtaatagtacttcctttatactttccttcaatcaaagc 288  Q
    |||||||||||||||| ||||||||||||||  ||||  |||||||||||||||||||||| ||||| || ||||||||||||||||| |||||    
T  3776599 caccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggtactaccattatactttccttcaatgaaagc 3776692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 288
Target Start/End: Original strand, 3780912 - 3781005
Alignment:
Q  195 caccaacaacaggcatctccctaaccttattcagagctggattcctccccaagatagtaatagtacttcctttatactttccttcaatcaaagc 288  Q
    ||||||||||||||||||||||||||  ||| |  || ||||||||||| | |||||||| |||||| || ||||||||||||||||| |||||    
T  3780912 caccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatactttccttcaatgaaagc 3781005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 195 - 288
Target Start/End: Original strand, 3751539 - 3751632
Alignment:
Q  195 caccaacaacaggcatctccctaaccttattcagagctggattcctccccaagatagtaatagtacttcctttatactttccttcaatcaaagc 288  Q
    |||||| || ||||||||| ||| ||||||| | | | | ||||||||||||||||||||| ||||| || ||||||||||||||||| |||||    
T  3751539 caccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttccttcaatgaaagc 3751632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 15045570 - 15045641
Alignment:
Q  30 tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccct 101  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||||||| |||||||    
T  15045570 tgtttttgaaagcactacccatgaataccggtataaatttccgcgccacggtagccctacgaatggctccct 15045641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 15047553 - 15047606
Alignment:
Q  128 tcatcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct 181  Q
    ||||| |||||||||||||| ||||||| |||||| ||||||||||||| ||||    
T  15047553 tcatcactaagaaacgcttccgcaagtatatcatcaacctctgacacagtttct 15047606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 44307022 - 44307073
Alignment:
Q  45 tacccatgaataccggtataaatttccgtgctatggtagccctacgaattgc 96  Q
    |||||||||| |  |||| |||||||||||||||||| ||||||||||||||    
T  44307022 tacccatgaaaattggtacaaatttccgtgctatggttgccctacgaattgc 44307073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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