View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0226_low_35 (Length: 277)
Name: NF0226_low_35
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0226_low_35 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 30 - 269
Target Start/End: Complemental strand, 13660373 - 13660134
Alignment:
| Q |
30 |
cctgggtgccccaccatcctccatgcaacagctaaggcttcatgatcatcaggacctccaataaagatcatacaaattcgaaagttcatttttgttattg |
129 |
Q |
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| T |
13660373 |
cctgggtgccccaccatcctccatgcaacagctaaggcttcatgatcatcaggacctccaataaagatcatacaaattcgaaagttcatttttgttattg |
13660274 |
T |
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| Q |
130 |
acccaagattacgatcaacaaagattcccacagagcaaggtgaagtttgcatcacattctggtttatatctttgtatgcaacactagttgtttcgagtgc |
229 |
Q |
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| T |
13660273 |
acccaagattacgatcaacaaagattcccacagagcaaggtgaagtttgcatcacattctggtttatatctttgtatgcaacactagttgtttcgagtgc |
13660174 |
T |
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| Q |
230 |
acctaatgaacttaagtgtttatggaatggaagtataatc |
269 |
Q |
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| T |
13660173 |
acctaatgaacttaagtgtttatggaatggaagtataatc |
13660134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 32 - 269
Target Start/End: Complemental strand, 13652871 - 13652634
Alignment:
| Q |
32 |
tgggtgccccaccatcctccatgcaacagctaaggcttcatgatcatcaggacctccaataaagatcatacaaattcgaaagttcatttttgttattgac |
131 |
Q |
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| T |
13652871 |
tgggtgctccgccatcctccatgcaacagttaaggcttcatggtcatcagggccaccaacaaatatcatacaaattcgaaagttcattttcggtaatgtc |
13652772 |
T |
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| Q |
132 |
ccaagattacgatcaacaaagattcccacagagcaaggtgaagtttgcatcacattctggtttatatctttgtatgcaacactagttgtttcgagtgcac |
231 |
Q |
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| T |
13652771 |
ccaagattacgatcaacaaagattcccacagagcaaggtgcagtttgcatcacattcaggtttatatctttgtatgcaacactagttgtttcgagtgcac |
13652672 |
T |
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| Q |
232 |
ctaatgaacttaagtgtttatggaatggaagtataatc |
269 |
Q |
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| T |
13652671 |
ctaatgaacttaagtgtttatggaatggaagtataatc |
13652634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 43 - 262
Target Start/End: Original strand, 437915 - 438134
Alignment:
| Q |
43 |
ccatcctccatgcaacagctaaggcttcatgatcatcaggacctccaataaagatcatacaaattcgaaagttcatttttgttattgacccaagattacg |
142 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||| ||||| || | ||| || ||||||||||| ||| |
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| T |
437915 |
ccattctccatgcaacagctaaggcttcgcgatcatcaggaccaccaacaaagatcatacaaatacgaaaatttaaagttggtaatgacccaagatcacg |
438014 |
T |
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| Q |
143 |
atcaacaaagattcccacagagcaaggtgaagtttgcatcacattctggtttatatctttgtatgcaacactagttgtttcgagtgcacctaatgaactt |
242 |
Q |
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| T |
438015 |
gtccacaaatattcccacagagcaaggtgcactttgcatcacattcaagtttatatctttgtatgcagtattagttgtttcgagtgcaccttctgaactt |
438114 |
T |
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| Q |
243 |
aagtgtttatggaatggaag |
262 |
Q |
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| T |
438115 |
agttgtttgtggaatggaag |
438134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 44 - 262
Target Start/End: Complemental strand, 28608988 - 28608770
Alignment:
| Q |
44 |
catcctccatgcaacagctaaggcttcatgatcatcaggacctccaataaagatcatacaaattcgaaagttcatttttgttattgacccaagattacga |
143 |
Q |
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|||||||||||| |||| ||| ||||| |||||||||||||||||| ||||||||||||||| ||||| |||||||||| || ||||||||||||||| |
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| T |
28608988 |
catcctccatgcgacagataatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacga |
28608889 |
T |
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| Q |
144 |
tcaacaaagattcccacagagcaaggtgaagtttgcatcacattctggtttatatctttgtatgcaacactagttgtttcgagtgcacctaatgaactta |
243 |
Q |
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| T |
28608888 |
tcaacaaataatcccacagagcaaggtgcactttgcatcacattcaagtttatatctttgaacgcaacatcagttgtttcaaatgcaccttccggactta |
28608789 |
T |
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| Q |
244 |
agtgtttatggaatggaag |
262 |
Q |
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| T |
28608788 |
gttgtttgtggaatggaag |
28608770 |
T |
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