View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_low_35 (Length: 277)
Name: NF0226_low_35
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_low_35
[» ] scaffold0002 (1 HSPs)
Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 30 - 269
Target Start/End: Complemental strand, 13660373 - 13660134
Alignment:
Q
30
cctgggtgccccaccatcctccatgcaacagctaaggcttcatgatcatcaggacctccaataaagatcatacaaattcgaaagttcatttttgttattg
129
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
13660373
cctgggtgccccaccatcctccatgcaacagctaaggcttcatgatcatcaggacctccaataaagatcatacaaattcgaaagttcatttttgttattg
13660274
T
Q
130
acccaagattacgatcaacaaagattcccacagagcaaggtgaagtttgcatcacattctggtttatatctttgtatgcaacactagttgtttcgagtgc
229
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
13660273
acccaagattacgatcaacaaagattcccacagagcaaggtgaagtttgcatcacattctggtttatatctttgtatgcaacactagttgtttcgagtgc
13660174
T
Q
230
acctaatgaacttaagtgtttatggaatggaagtataatc
269
Q
||||||||||||||||||||||||||||||||||||||||
T
13660173
acctaatgaacttaagtgtttatggaatggaagtataatc
13660134
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 32 - 269
Target Start/End: Complemental strand, 13652871 - 13652634
Alignment:
Q
32
tgggtgccccaccatcctccatgcaacagctaaggcttcatgatcatcaggacctccaataaagatcatacaaattcgaaagttcatttttgttattgac
131
Q
||||||| || |||||||||||||||||| |||||||||||| |||||||| || |||| ||| |||||||||||||||||||||||||| | || || |
T
13652871
tgggtgctccgccatcctccatgcaacagttaaggcttcatggtcatcagggccaccaacaaatatcatacaaattcgaaagttcattttcggtaatgtc
13652772
T
Q
132
ccaagattacgatcaacaaagattcccacagagcaaggtgaagtttgcatcacattctggtttatatctttgtatgcaacactagttgtttcgagtgcac
231
Q
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
T
13652771
ccaagattacgatcaacaaagattcccacagagcaaggtgcagtttgcatcacattcaggtttatatctttgtatgcaacactagttgtttcgagtgcac
13652672
T
Q
232
ctaatgaacttaagtgtttatggaatggaagtataatc
269
Q
||||||||||||||||||||||||||||||||||||||
T
13652671
ctaatgaacttaagtgtttatggaatggaagtataatc
13652634
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 43 - 262
Target Start/End: Original strand, 437915 - 438134
Alignment:
Q
43
ccatcctccatgcaacagctaaggcttcatgatcatcaggacctccaataaagatcatacaaattcgaaagttcatttttgttattgacccaagattacg
142
Q
|||| ||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||| ||||| || | ||| || ||||||||||| |||
T
437915
ccattctccatgcaacagctaaggcttcgcgatcatcaggaccaccaacaaagatcatacaaatacgaaaatttaaagttggtaatgacccaagatcacg
438014
T
Q
143
atcaacaaagattcccacagagcaaggtgaagtttgcatcacattctggtttatatctttgtatgcaacactagttgtttcgagtgcacctaatgaactt
242
Q
|| ||||| ||||||||||||||||||| | |||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| |||||||
T
438015
gtccacaaatattcccacagagcaaggtgcactttgcatcacattcaagtttatatctttgtatgcagtattagttgtttcgagtgcaccttctgaactt
438114
T
Q
243
aagtgtttatggaatggaag
262
Q
| ||||| |||||||||||
T
438115
agttgtttgtggaatggaag
438134
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 44 - 262
Target Start/End: Complemental strand, 28608988 - 28608770
Alignment:
Q
44
catcctccatgcaacagctaaggcttcatgatcatcaggacctccaataaagatcatacaaattcgaaagttcatttttgttattgacccaagattacga
143
Q
|||||||||||| |||| ||| ||||| |||||||||||||||||| ||||||||||||||| ||||| |||||||||| || |||||||||||||||
T
28608988
catcctccatgcgacagataatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacga
28608889
T
Q
144
tcaacaaagattcccacagagcaaggtgaagtttgcatcacattctggtttatatctttgtatgcaacactagttgtttcgagtgcacctaatgaactta
243
Q
|||||||| | ||||||||||||||||| | |||||||||||||| ||||||||||||| | |||||| ||||||||| | ||||||| | |||||
T
28608888
tcaacaaataatcccacagagcaaggtgcactttgcatcacattcaagtttatatctttgaacgcaacatcagttgtttcaaatgcaccttccggactta
28608789
T
Q
244
agtgtttatggaatggaag
262
Q
||||| |||||||||||
T
28608788
gttgtttgtggaatggaag
28608770
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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