View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_low_38 (Length: 268)
Name: NF0226_low_38
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_low_38
[» ] chr4 (4 HSPs)
Alignment Details
Target: chr2 (Bit Score: 144; Significance: 9e-76; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 6915322 - 6915171
Alignment:
Q
24
tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcagctgaaatgttctcatc
123
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
6915322
tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcagctgaaatgttctcatc
6915223
T
Q
124
atcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct
175
Q
||| ||||||||||||||||||||||||||||||||||||||||||| ||||
T
6915222
atcactaagaaacgcttcagcaagtacatcatctacctctgacacagtttct
6915171
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 10492777 - 10492833
Alignment:
Q
35
gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct
91
Q
|||||||||||||| ||||||| |||||| |||||||||| |||||||||||||||
T
10492777
gcactacccatgaaaaccggtacaaatttatgtgctatggttgccctacgaattgct
10492833
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 28105402 - 28105350
Alignment:
Q
34
agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaa
86
Q
|||| ||||||||||||| |||||||| |||||||||||||| ||||||||||
T
28105402
agcattacccatgaatactggtataaacttccgtgctatggtggccctacgaa
28105350
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 10463585 - 10463648
Alignment:
Q
28
tttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct
91
Q
||||| ||||||||||||||| | |||||||||||||||||||| || || ||||||||||||
T
10463585
tttgaaagcactacccatgaaaaatggtataaatttccgtgctatcgtggctctacgaattgct
10463648
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 10507349 - 10507396
Alignment:
Q
28
tttgacagcactacccatgaataccggtataaatttccgtgctatggt
75
Q
||||| |||||| ||||||||||| |||||||||||||||||||||||
T
10507349
tttgaaagcactgcccatgaatacgggtataaatttccgtgctatggt
10507396
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 10860707 - 10860758
Alignment:
Q
40
acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct
91
Q
|||||||||||| ||||||||||||||||||||||| ||||||||| ||||
T
10860707
acccatgaatactggtataaatttccgtgctatggtgaccctacgaactgct
10860758
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 10474161 - 10474223
Alignment:
Q
29
ttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct
91
Q
|||| |||||| |||||||||| |||||||| |||||||||||||| |||||||||| ||||
T
10474161
ttgaaagcactgcccatgaatattggtataaacttccgtgctatggtggccctacgaactgct
10474223
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 7476622 - 7476566
Alignment:
Q
35
gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct
91
Q
|||||||||||||| ||||||| ||||||| ||||||| || |||||| ||||||||
T
7476622
gcactacccatgaaaaccggtacaaatttctgtgctatagttgccctatgaattgct
7476566
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 10848803 - 10848854
Alignment:
Q
40
acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct
91
Q
|||||||||||| ||||||||||| |||||||||| |||||||||| ||||
T
10848803
acccatgaatactggtataaatttgtgtgctatggtggccctacgaactgct
10848854
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 7478788 - 7478731
Alignment:
Q
34
agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct
91
Q
|||||| |||||||| |||||||||||||| |||||| |||| |||||| ||| ||||
T
7478788
agcactgcccatgaagaccggtataaatttgcgtgctctggttgccctaagaactgct
7478731
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 183 - 268
Target Start/End: Original strand, 3762512 - 3762597
Alignment:
Q
183
cactgtcaccaacaacaggcatctccctaaccttattacgagctggattcctccccaagaacgtaatagtacttccattatacttt
268
Q
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||
T
3762512
cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatacttt
3762597
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 3776599 - 3776678
Alignment:
Q
189
caccaacaacaggcatctccctaaccttattacgagctggattcctccccaagaacgtaatagtacttccattatacttt
268
Q
|||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||||| ||||||||||||
T
3776599
caccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggtactaccattatacttt
3776678
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 3745722 - 3745801
Alignment:
Q
189
caccaacaacaggcatctccctaaccttattacgagctggattcctccccaagaacgtaatagtacttccattatacttt
268
Q
||||||||| |||||| ||||||||||||||| |||| | ||| |||||||||| ||||||||||| ||||||||||||
T
3745722
caccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagtactcccattatacttt
3745801
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 3780912 - 3780991
Alignment:
Q
189
caccaacaacaggcatctccctaaccttattacgagctggattcctccccaagaacgtaatagtacttccattatacttt
268
Q
|||||||||||||||||||||||||| |||| || ||||||||||| | || |||| |||||| ||||||||||||
T
3780912
caccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatacttt
3780991
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 15045570 - 15045641
Alignment:
Q
24
tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccct
95
Q
||||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||||||| |||||||
T
15045570
tgtttttgaaagcactacccatgaataccggtataaatttccgcgccacggtagccctacgaatggctccct
15045641
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 15047553 - 15047606
Alignment:
Q
122
tcatcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct
175
Q
||||| |||||||||||||| ||||||| |||||| ||||||||||||| ||||
T
15047553
tcatcactaagaaacgcttccgcaagtatatcatcaacctctgacacagtttct
15047606
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 44307022 - 44307073
Alignment:
Q
39
tacccatgaataccggtataaatttccgtgctatggtagccctacgaattgc
90
Q
|||||||||| | |||| |||||||||||||||||| ||||||||||||||
T
44307022
tacccatgaaaattggtacaaatttccgtgctatggttgccctacgaattgc
44307073
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
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