View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0226_low_39 (Length: 266)

Name: NF0226_low_39
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0226_low_39
NF0226_low_39
[»] chr1 (10 HSPs)
chr1 (18-237)||(15040044-15040263)
chr1 (57-169)||(14467130-14467242)
chr1 (56-237)||(15001433-15001614)
chr1 (59-169)||(14533418-14533528)
chr1 (135-237)||(15016520-15016622)
chr1 (18-172)||(14503270-14503424)
chr1 (135-229)||(15010405-15010499)
chr1 (151-237)||(15024538-15024624)
chr1 (151-237)||(15031879-15031965)
chr1 (151-229)||(15036441-15036519)
[»] scaffold0400 (2 HSPs)
scaffold0400 (58-237)||(5819-5998)
scaffold0400 (50-110)||(12099-12159)
[»] scaffold0365 (2 HSPs)
scaffold0365 (58-237)||(6463-6642)
scaffold0365 (50-110)||(12742-12802)
[»] chr7 (2 HSPs)
chr7 (129-229)||(14605297-14605397)
chr7 (196-230)||(17847997-17848031)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 15040044 - 15040263
Alignment:
Q  18 atgaataggcttaacaaattgaagattctgcagttaggtgataataatttcataggtcatttacctcacaatatatgtaatagtggaaagttaactgtgt 117  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  15040044 atgaataggcttaacaaattgaagattctgcagtttggtgataataatttcataggtcatttacctcccaatatatgtagtagtggaaagttaactgtgt 15040143  T
Q  118 tctcggctagaaataatcagttcacaggtccaattccaaagagtttgaagaattgttcaagtctaaagagagtgagaattgaacaaaaccaacttgctgg 217  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15040144 tctcggctagaaatactcagttcacaggtccaattccaaagagtttgaagaattgttcaagtctaaagagagtgagacttgaacaaaaccaacttgctgg 15040243  T
Q  218 aaatataacagatagctttg 237  Q
    ||||||||||||||||||||    
T  15040244 aaatataacagatagctttg 15040263  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 169
Target Start/End: Original strand, 14467130 - 14467242
Alignment:
Q  57 gataataatttcataggtcatttacctcacaatatatgtaatagtggaaagttaactgtgttctcggctagaaataatcagttcacaggtccaattccaa 156  Q
    ||||||||||||| |||||||||||||||||| ||||||  | ||||||||||||||  |||||| || || ||||| || |||||||| ||||||||||    
T  14467130 gataataatttcacaggtcatttacctcacaacatatgtgctggtggaaagttaacttggttctccgccagcaataaccaattcacaggcccaattccaa 14467229  T
Q  157 agagtttgaagaa 169  Q
    |||||||||||||    
T  14467230 agagtttgaagaa 14467242  T

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Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 237
Target Start/End: Original strand, 15001433 - 15001614
Alignment:
Q  56 tgataataatttcataggtcatttacctcacaatatatgtaatagtggaaagttaactgtgttctcggctagaaataatcagttcacaggtccaattcca 155  Q
    ||||||||||||  | |||||||||||||||||||| |||||  |||| |||||||   ||||| | | |  |  ||| ||||||||||| | | |||||    
T  15001433 tgataataattttgttggtcatttacctcacaatatttgtaacggtgggaagttaaaaatgttcactgttgcacttaaccagttcacaggcctagttcca 15001532  T
Q  156 aagagtttgaagaattgttcaagtctaaagagagtgagaattgaacaaaaccaacttgctggaaatataacagatagctttg 237  Q
     |||||||||||||||| ||||| || | |||||||||| || |||||||||||||  |||||||||||||||| |||||||    
T  15001533 gagagtttgaagaattgctcaagccttacgagagtgagacttcaacaaaaccaactgactggaaatataacagacagctttg 15001614  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 169
Target Start/End: Complemental strand, 14533528 - 14533418
Alignment:
Q  59 taataatttcataggtcatttacctcacaatatatgtaatagtggaaagttaactgtgttctcggctagaaataatcagttcacaggtccaattccaaag 158  Q
    ||||||||||| |||||||||||||| ||| || |||  | || |||||||||||  |||||| || || ||||| || |||||||| ||||||||||||    
T  14533528 taataatttcacaggtcatttacctctcaacatttgtgctggtagaaagttaactaagttctccgccagcaataaccaattcacaggcccaattccaaag 14533429  T
Q  159 agtttgaagaa 169  Q
    |||||||||||    
T  14533428 agtttgaagaa 14533418  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 15016520 - 15016622
Alignment:
Q  135 cagttcacaggtccaattccaaagagtttgaagaattgttcaagtctaaagagagtgagaattgaacaaaaccaacttgctggaaatataacagatagct 234  Q
    ||||||||||| | | ||||| |||||||||||||||| ||||| || |||||| ||||  ||||||||||||||||  |||||||||||||| |||| |    
T  15016520 cagttcacaggcctagttccagagagtttgaagaattgctcaagccttaagagactgaggcttgaacaaaaccaactgactggaaatataacaaatagtt 15016619  T
Q  235 ttg 237  Q
    |||    
T  15016620 ttg 15016622  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 14503270 - 14503424
Alignment:
Q  18 atgaataggcttaacaaattgaagattctgcagttaggtgataataatttcataggtcatttacctcacaatatatgtaatagtggaaagttaactgtgt 117  Q
    ||||||||| | | ||| ||||| ||| |||| |||  |||||||||||||||||| |||||||||||||| || |||  | |||||| ||| ||    |    
T  14503270 atgaataggataaccaatttgaaaattttgcaattatctgataataatttcataggccatttacctcacaacatttgtgttggtggaatgttgacaaatt 14503369  T
Q  118 tctcggctagaaataatcagttcacaggtccaattccaaagagtttgaagaattg 172  Q
    || | ||||| ||||| || |||||||| ||||||||||||||||| ||||||||    
T  14503370 tcactgctagtaataaccaattcacagggccaattccaaagagtttaaagaattg 14503424  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 15010405 - 15010499
Alignment:
Q  135 cagttcacaggtccaattccaaagagtttgaagaattgttcaagtctaaagagagtgagaattgaacaaaaccaacttgctggaaatataacaga 229  Q
    ||||||||||| | | ||||| |||||||||||||||| ||||| || | |||| ||||  |||| |||||||||||| ||||||||||||||||    
T  15010405 cagttcacaggcctagttccagagagtttgaagaattgctcaagccttacgagactgaggcttgatcaaaaccaacttactggaaatataacaga 15010499  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 237
Target Start/End: Original strand, 15024538 - 15024624
Alignment:
Q  151 ttccaaagagtttgaagaattgttcaagtctaaagagagtgagaattgaacaaaaccaacttgctggaaatataacagatagctttg 237  Q
    ||||| |||||||||||||||| | ||| || || ||||||||  |||| |||||||||||  |||||||||||||| |||| ||||    
T  15024538 ttccagagagtttgaagaattgcttaagccttaaaagagtgaggcttgatcaaaaccaactgactggaaatataacaaatagttttg 15024624  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 237
Target Start/End: Original strand, 15031879 - 15031965
Alignment:
Q  151 ttccaaagagtttgaagaattgttcaagtctaaagagagtgagaattgaacaaaaccaacttgctggaaatataacagatagctttg 237  Q
    ||||| |||||||||||||||| | ||| || || ||||||||  |||| |||||||||||  |||||||||||||| |||| ||||    
T  15031879 ttccagagagtttgaagaattgcttaagccttaaaagagtgaggcttgatcaaaaccaactgactggaaatataacaaatagttttg 15031965  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 15036441 - 15036519
Alignment:
Q  151 ttccaaagagtttgaagaattgttcaagtctaaagagagtgagaattgaacaaaaccaacttgctggaaatataacaga 229  Q
    ||||| |||||||||||||||| ||||| ||  ||||| ||||  || | |||||||||||  ||||||||||||||||    
T  15036441 ttccagagagtttgaagaattgctcaagccttgagagattgaggcttaaccaaaaccaactgactggaaatataacaga 15036519  T

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Target: scaffold0400 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 58 - 237
Target Start/End: Original strand, 5819 - 5998
Alignment:
Q  58 ataataatttcataggtcatttacctcacaatatatgtaatagtggaaagttaactgtgttctcggctagaaataatcagttcacaggtccaattccaaa 157  Q
    |||||||||||| |||||||||||||||||||||||||  ||||||||||||||||   |||||  |||| ||||| |||||||  |||| | |||||||    
T  5819 ataataatttcacaggtcatttacctcacaatatatgtgttagtggaaagttaactcgtttctccactagtaataaccagttcattggtctagttccaaa 5918  T
Q  158 gagtttgaagaattgttcaagtctaaagagagtgagaattgaacaaaaccaacttgctggaaatataacagatagctttg 237  Q
    |||||| || ||||| ||||| || |||||||||||| || |||||||||||||  ||| ||||||||||||||||||||    
T  5919 gagtttaaaaaattgctcaagccttaagagagtgagacttcaacaaaaccaactgactgcaaatataacagatagctttg 5998  T

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Target: scaffold0400; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 12099 - 12159
Alignment:
Q  50 gttaggtgataataatttcataggtcatttacctcacaatatatgtaatagtggaaagtta 110  Q
    |||||||||||||||||||| |||||| ||||| ||||| || |||  |||||||||||||    
T  12099 gttaggtgataataatttcacaggtcaattaccgcacaacatttgtgttagtggaaagtta 12159  T

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Target: scaffold0365 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 58 - 237
Target Start/End: Original strand, 6463 - 6642
Alignment:
Q  58 ataataatttcataggtcatttacctcacaatatatgtaatagtggaaagttaactgtgttctcggctagaaataatcagttcacaggtccaattccaaa 157  Q
    |||||||||||| |||||||||||||||||||||||||  ||||||||||||||||   |||||  |||| ||||| |||||||  |||| | |||||||    
T  6463 ataataatttcacaggtcatttacctcacaatatatgtgttagtggaaagttaactcgtttctccactagtaataaccagttcattggtctagttccaaa 6562  T
Q  158 gagtttgaagaattgttcaagtctaaagagagtgagaattgaacaaaaccaacttgctggaaatataacagatagctttg 237  Q
    |||||| || ||||| ||||| || |||||||||||| || |||||||||||||  ||| ||||||||||||||||||||    
T  6563 gagtttaaaaaattgctcaagccttaagagagtgagacttcaacaaaaccaactgactgcaaatataacagatagctttg 6642  T

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Target: scaffold0365; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 12742 - 12802
Alignment:
Q  50 gttaggtgataataatttcataggtcatttacctcacaatatatgtaatagtggaaagtta 110  Q
    |||||||||||||||||||| |||||| ||||| ||||| || |||  |||||||||||||    
T  12742 gttaggtgataataatttcacaggtcaattaccgcacaacatttgtgttagtggaaagtta 12802  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 14605297 - 14605397
Alignment:
Q  129 aataatcagttcacaggtccaattccaaagagtttgaagaattgttcaagtctaaagagagtgagaattgaacaaaaccaacttgctggaaatataacag 228  Q
    ||||| || ||||||||  || |||||||||||||||||||||| || ||  | |  ||  | ||| ||||||||||||||||| |||||||||||||||    
T  14605297 aataaccacttcacaggctcagttccaaagagtttgaagaattgctctagcattattaggattagacttgaacaaaaccaacttactggaaatataacag 14605396  T
Q  229 a 229  Q
    |    
T  14605397 a 14605397  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 17847997 - 17848031
Alignment:
Q  196 ttgaacaaaaccaacttgctggaaatataacagat 230  Q
    ||||||||||||||||| |||||||||||||||||    
T  17847997 ttgaacaaaaccaactttctggaaatataacagat 17848031  T

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