View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0226_low_4 (Length: 477)
Name: NF0226_low_4
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0226_low_4
[» ] chr3 (3 HSPs)
Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 88 - 477
Target Start/End: Original strand, 10378521 - 10378911
Alignment:
Q
88
ctaacttatctgtacaacaatttccttcgcgaaaaatatgagatgaaaggatggaaatgcctccatgcgtacacttatgccacatttcaaagagaaaatg
187
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
10378521
ctaacttatctgtacaacaatttccttcgcgaaaaatatgagatgaaaggatggaaatgcctccatgcgtacacttatgccacatttcaaagagaaaatg
10378620
T
Q
188
aaactaacgaagggttccggaaagcctgcaaagcactctgggagtccctctccaccaaaagatgacgcagatggtgttgaatggcaaattccagaaccaa
287
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
10378621
aaactaacgaagggttccggaaagcctgcaaagcactctgggagtccctctccaccaaaagatgacgcagatggtgttgaatggcaaattccagaaccaa
10378720
T
Q
288
cacaaagccaaataactcagactcaaaaactga-ttttgacccaaattgtaagaaaaacaacccaaaaaagatcctcgataatcacgaaaaatgccacca
386
Q
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
10378721
cacaaagccaaataactcagactcaaaaactgatttttgacccaaattgtaagaaaaacaacccaaaaaagatcctcgataatcacgaaaaatgccacca
10378820
T
Q
387
caagcagccaagccatcaacaactgaaccctccaaaatcaactacactaaggaatgtgttgaagtacagtccgaaatccttcttcttcctg
477
Q
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
T
10378821
caagcagccaagccatcaacaactgaaccatccaaaatcaactacactaaggaatgtgttgaagtacagtccgaaatctttcttcttcctg
10378911
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 34796613 - 34796568
Alignment:
Q
88
ctaacttatctgtacaacaatttccttcgcgaaaaatatgagatga
133
Q
|||||||||| | ||||||||| ||||| |||||||||||||||||
T
34796613
ctaacttatccgcacaacaattaccttcacgaaaaatatgagatga
34796568
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 35976558 - 35976513
Alignment:
Q
101
acaacaatttccttcgcgaaaaatatgagatgaaaggatggaaatgcc
148
Q
||||||||| |||||| ||||||||||||||||||| ||||||||||
T
35976558
acaacaattcccttcgagaaaaatatgagatgaaag--tggaaatgcc
35976513
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 172 - 415
Target Start/End: Original strand, 31329213 - 31329455
Alignment:
Q
172
tttcaaagagaaaatgaaactaacgaagggttccggaaagcctgcaaagcactctgggagtccctctccaccaaaagatgacgcagatggtgttgaatgg
271
Q
|||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||| ||| ||||| | |||||
T
31329213
tttcgaagagaaaatggaactaacgaagggttcccgaaagcctgcaaagcactccaggagtccc-ctccaccctaagatgccgccaatggtacttaatgg
31329311
T
Q
272
caaattccagaaccaacacaaagccaaataactcaga---ctcaaaaactg-attttgacccaaattgtaagaaaaacaacccaaaaaagatcctcgata
367
Q
|||||||||| |||||||||| |||||||||| ||| ||||||||| | |||||||||||| ||| |||||||||||||||||||| ||||||||||
T
31329312
aaaattccagagccaacacaaatccaaataact-agacctctcaaaaaccgaattttgacccaagttgcaagaaaaacaacccaaaaaa-atcctcgata
31329409
T
Q
368
atcacgaaaaatgccaccacaagcagccaagccatcaacaactgaacc
415
Q
||| ||||||| | |||||||||||| ||||||| |||||||||||
T
31329410
ttcatgaaaaatactaccacaagcagctaagccat--acaactgaacc
31329455
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 172 - 415
Target Start/End: Original strand, 31335934 - 31336176
Alignment:
Q
172
tttcaaagagaaaatgaaactaacgaagggttccggaaagcctgcaaagcactctgggagtccctctccaccaaaagatgacgcagatggtgttgaatgg
271
Q
|||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||| ||| ||||| | |||||
T
31335934
tttcgaagagaaaatggaactaacgaagggttcccgaaagcctgcaaagcactccaggagtccc-ctccaccctaagatgccgccaatggtacttaatgg
31336032
T
Q
272
caaattccagaaccaacacaaagccaaataactcaga---ctcaaaaactg-attttgacccaaattgtaagaaaaacaacccaaaaaagatcctcgata
367
Q
|||||||||| |||||||||| |||||||||| ||| ||||||||| | |||||||||||| ||| |||||||||||||||||||| ||||||||||
T
31336033
aaaattccagagccaacacaaatccaaataact-agacctctcaaaaaccgaattttgacccaagttgcaagaaaaacaacccaaaaaa-atcctcgata
31336130
T
Q
368
atcacgaaaaatgccaccacaagcagccaagccatcaacaactgaacc
415
Q
||| ||||||| | |||||||||||| ||||||| |||||||||||
T
31336131
ttcatgaaaaatactaccacaagcagctaagccat--acaactgaacc
31336176
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 88 - 166
Target Start/End: Original strand, 31326586 - 31326664
Alignment:
Q
88
ctaacttatctgtacaacaatttccttcgcgaaaaatatgagatgaaaggatggaaatgcctccatgcgtacacttatg
166
Q
|||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
T
31326586
ctaacttatccgcacaacaatttccttcgcgaaaaatatgagatgaaatgatggaaatgcctccatgcgtacaattatg
31326664
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 20937115 - 20937160
Alignment:
Q
88
ctaacttatctgtacaacaatttccttcgcgaaaaatatgagatga
133
Q
|||||||||| | ||||||||| ||||| |||||||||||||||||
T
20937115
ctaacttatccgcacaacaattaccttcacgaaaaatatgagatga
20937160
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 22523104 - 22523149
Alignment:
Q
88
ctaacttatctgtacaacaatttccttcgcgaaaaatatgagatga
133
Q
|||||||||| | ||||||||| ||||| |||||||||||||||||
T
22523104
ctaacttatccgcacaacaattaccttcacgaaaaatatgagatga
22523149
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
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