View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0226_low_4 (Length: 477)
Name: NF0226_low_4
Description: NF0226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0226_low_4 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 88 - 477
Target Start/End: Original strand, 10378521 - 10378911
Alignment:
| Q |
88 |
ctaacttatctgtacaacaatttccttcgcgaaaaatatgagatgaaaggatggaaatgcctccatgcgtacacttatgccacatttcaaagagaaaatg |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10378521 |
ctaacttatctgtacaacaatttccttcgcgaaaaatatgagatgaaaggatggaaatgcctccatgcgtacacttatgccacatttcaaagagaaaatg |
10378620 |
T |
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| Q |
188 |
aaactaacgaagggttccggaaagcctgcaaagcactctgggagtccctctccaccaaaagatgacgcagatggtgttgaatggcaaattccagaaccaa |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10378621 |
aaactaacgaagggttccggaaagcctgcaaagcactctgggagtccctctccaccaaaagatgacgcagatggtgttgaatggcaaattccagaaccaa |
10378720 |
T |
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| Q |
288 |
cacaaagccaaataactcagactcaaaaactga-ttttgacccaaattgtaagaaaaacaacccaaaaaagatcctcgataatcacgaaaaatgccacca |
386 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10378721 |
cacaaagccaaataactcagactcaaaaactgatttttgacccaaattgtaagaaaaacaacccaaaaaagatcctcgataatcacgaaaaatgccacca |
10378820 |
T |
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| Q |
387 |
caagcagccaagccatcaacaactgaaccctccaaaatcaactacactaaggaatgtgttgaagtacagtccgaaatccttcttcttcctg |
477 |
Q |
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| T |
10378821 |
caagcagccaagccatcaacaactgaaccatccaaaatcaactacactaaggaatgtgttgaagtacagtccgaaatctttcttcttcctg |
10378911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 34796613 - 34796568
Alignment:
| Q |
88 |
ctaacttatctgtacaacaatttccttcgcgaaaaatatgagatga |
133 |
Q |
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| T |
34796613 |
ctaacttatccgcacaacaattaccttcacgaaaaatatgagatga |
34796568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 35976558 - 35976513
Alignment:
| Q |
101 |
acaacaatttccttcgcgaaaaatatgagatgaaaggatggaaatgcc |
148 |
Q |
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| T |
35976558 |
acaacaattcccttcgagaaaaatatgagatgaaag--tggaaatgcc |
35976513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 172 - 415
Target Start/End: Original strand, 31329213 - 31329455
Alignment:
| Q |
172 |
tttcaaagagaaaatgaaactaacgaagggttccggaaagcctgcaaagcactctgggagtccctctccaccaaaagatgacgcagatggtgttgaatgg |
271 |
Q |
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|||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||| ||| ||||| | ||||| |
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| T |
31329213 |
tttcgaagagaaaatggaactaacgaagggttcccgaaagcctgcaaagcactccaggagtccc-ctccaccctaagatgccgccaatggtacttaatgg |
31329311 |
T |
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| Q |
272 |
caaattccagaaccaacacaaagccaaataactcaga---ctcaaaaactg-attttgacccaaattgtaagaaaaacaacccaaaaaagatcctcgata |
367 |
Q |
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|||||||||| |||||||||| |||||||||| ||| ||||||||| | |||||||||||| ||| |||||||||||||||||||| |||||||||| |
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| T |
31329312 |
aaaattccagagccaacacaaatccaaataact-agacctctcaaaaaccgaattttgacccaagttgcaagaaaaacaacccaaaaaa-atcctcgata |
31329409 |
T |
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| Q |
368 |
atcacgaaaaatgccaccacaagcagccaagccatcaacaactgaacc |
415 |
Q |
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| T |
31329410 |
ttcatgaaaaatactaccacaagcagctaagccat--acaactgaacc |
31329455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 172 - 415
Target Start/End: Original strand, 31335934 - 31336176
Alignment:
| Q |
172 |
tttcaaagagaaaatgaaactaacgaagggttccggaaagcctgcaaagcactctgggagtccctctccaccaaaagatgacgcagatggtgttgaatgg |
271 |
Q |
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|||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||| ||| ||||| | ||||| |
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| T |
31335934 |
tttcgaagagaaaatggaactaacgaagggttcccgaaagcctgcaaagcactccaggagtccc-ctccaccctaagatgccgccaatggtacttaatgg |
31336032 |
T |
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| Q |
272 |
caaattccagaaccaacacaaagccaaataactcaga---ctcaaaaactg-attttgacccaaattgtaagaaaaacaacccaaaaaagatcctcgata |
367 |
Q |
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|||||||||| |||||||||| |||||||||| ||| ||||||||| | |||||||||||| ||| |||||||||||||||||||| |||||||||| |
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| T |
31336033 |
aaaattccagagccaacacaaatccaaataact-agacctctcaaaaaccgaattttgacccaagttgcaagaaaaacaacccaaaaaa-atcctcgata |
31336130 |
T |
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| Q |
368 |
atcacgaaaaatgccaccacaagcagccaagccatcaacaactgaacc |
415 |
Q |
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||| ||||||| | |||||||||||| ||||||| ||||||||||| |
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| T |
31336131 |
ttcatgaaaaatactaccacaagcagctaagccat--acaactgaacc |
31336176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 88 - 166
Target Start/End: Original strand, 31326586 - 31326664
Alignment:
| Q |
88 |
ctaacttatctgtacaacaatttccttcgcgaaaaatatgagatgaaaggatggaaatgcctccatgcgtacacttatg |
166 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
31326586 |
ctaacttatccgcacaacaatttccttcgcgaaaaatatgagatgaaatgatggaaatgcctccatgcgtacaattatg |
31326664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 20937115 - 20937160
Alignment:
| Q |
88 |
ctaacttatctgtacaacaatttccttcgcgaaaaatatgagatga |
133 |
Q |
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|||||||||| | ||||||||| ||||| ||||||||||||||||| |
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| T |
20937115 |
ctaacttatccgcacaacaattaccttcacgaaaaatatgagatga |
20937160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 22523104 - 22523149
Alignment:
| Q |
88 |
ctaacttatctgtacaacaatttccttcgcgaaaaatatgagatga |
133 |
Q |
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|||||||||| | ||||||||| ||||| ||||||||||||||||| |
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| T |
22523104 |
ctaacttatccgcacaacaattaccttcacgaaaaatatgagatga |
22523149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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